Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0195 ATGTATTTCATTTCCATTAACGTTTTTGATTTGTGTATTTTCTTTAACTTGCTCGATAGAGTAATAGTTTCGATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATTGTGGTAAGTAGTTCTACTCAACTTCGAACAATTATTAGATATTATTACTATTTTGTTGTTTTCTCTTGTGATTTTTTTGGGCTCAATGATAGTCAGTTTTTGTTTTTTTTTGTACAGGTTGATTATACTACCGTTTTTGTTTTTCGTCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACCTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGCCCTTGCTCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCACAACAAGGGATTCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCCGCAGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTACTTACCATCCTGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCTAAATTCAGGTTAAAGGCTGTTCCAACGGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATCGACGAGTGGCTTCGACTGAATGTAAAATGCCCTAGATGTCGTTGCTCGGTCTTCCCAAACCTCGACCTCAGTGCTCTGTCCAATCTTCGTTCGGATACTGATAGACCATCTGCAAGTGTTGTTACGGCCAATCGTTATATGAGATCTCAACCTACCAGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGACATGTTCGCACAGAAAACACTGGTGCACACGGCGATTTAGAGTCTGCTAGTGCTTTGGAAGCTGCCGAGAATGCTGAGATTGGGTCTGCGTCTGCCCATGACCAAACTGTACCCGGACGGTCGCCCGTGAGACCCATGTCTTTGAGTCAGTCCACATCACAACTCTAG 1254 43.7 MYFISINVFDLCIFFNLLDRVIVSINWKRYHTCVHPLHIWIVVSSSTQLRTIIRYYYYFVVFSCDFFGLNDSQFLFFFVQVDYTTVFVFRLLMFVDNGLAAGMGLDLGWQQRYARFCGRIVVLSALALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAATYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANRYMRSQPTSQSYLVRLQGLLRHVRTENTGAHGDLESASALEAAENAEIGSASAHDQTVPGRSPVRPMSLSQSTSQL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1548748 1554792 + Hsped.09g01950.1 Hepe09g0195 578879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0195 417 MobiDBLite consensus disorder prediction 391 417 - -
Hepe09g0195 417 MobiDBLite consensus disorder prediction 387 417 - -
Hepe09g0195 417 SUPERFAMILY RING/U-box 251 319 - -
Hepe09g0195 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 75 394 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Hepe09g0195 417 SMART ring_2 270 310 IPR001841 -
Hepe09g0195 417 FunFam E3 ubiquitin-protein ligase SIS3 238 316 - -
Hepe09g0195 417 Pfam Ring finger domain 269 311 IPR001841 -
Hepe09g0195 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 316 IPR013083 -
Hepe09g0195 417 ProSiteProfiles Zinc finger RING-type profile. 270 311 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0195 Hepe-Chr9:1548748 Hepe09g0621 Hepe-Chr9:5776749 7.88e-09 dispersed
Hepe07g2232 Hepe-Chr7:66759682 Hepe09g0195 Hepe-Chr9:1548748 1.16e-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0195 K16284 - csv:101208939 653.669