Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0198 ATGCCGGGAATTGTCATGGATGAAGTTAATGATGAAAGGGCTGTGAATAAACACAACGGTTCTTCAATTCATATGGAAGAGTCGTATGGAAACAAGTCGCCAAGGAGCGGGTTGAGTCTTCAGAGCCATGGAAGTGTTCATGTTGATTTCCCTGTTGATGGCTTGGTTGATACCTCTATTGAGAAGCTTTATGAAAATGTTTGTGATATGCAAAGTTCGGATCAGTCTCCTTCAAGGCGGAGCTTTGGATCTGATGGTGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTAGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGACATTGTTGATGTTGAGAAGCCTGAAAATGATTTTCCTAGTGATTTTGTGAAAGATTCACCGTCTGTAGATAAGAAGGAGAAAACAGAAAATACCCAACCTGGAAACTCGAGACGTCTTTCTTCTGGAAAAAAACCTTCTCACTTCCAATTGGACCACGAGACATCTCCAAAATCAAGCCCCAGGGGCAAGGGTTTGTCTGATAAACCCCCTATTAGCAGAAAGAACGAAAAAAATCCGAAAAAAACTAGTCCTGTTGCTGCTCAGTCAAAGAAACAGAAAGATTCACCTTTGAGAGGGCCAAAAGTGCAGAATGGAACTGAGGATGTCAATGAATCATTGATGGATAGTCCTGATCTAGGACCCTTTCTACTTAAGCAAGCAAGGAATTTAGTTTCTTCAGGGGAGAATCTGCAGAAAGCTCTTGTATTAGCTCTTCGTGCCGCAAAATCTTTTGAACTATCTGCAAATGGGAAACCCAGCTTAGAACTTGTTATGTGTTTGCACGTCACAGCAGCTATATACTGCAGTTTAGGCCAGTACAGTGAGGCGATACCTCTTTTGGAGCATTCCATTGAGATTCCTGCCATCGAGGAAGGCCACGAGCATGCGCTGGCCAAATTTGCAGGTCACATGCAGTTAGGTGATACCTATGCAATGCTGGGCCAGCTGGAGAATTCTCTAATCTGTTATACAACTGGGTTAGAGGTGCAGAAACAAGTCCTAGGAGAATCTGACCCCAGAGTTGGTGAGACCTATAGATATTTAGCTGAAGCCCATGTTCAAGCCTTGCAATTTAATGCGGCCGAGAAGTTTTGTCATATGGCTCTCGATATTCACCAAAAGAATGTTGGTCCTGCTTCTATTGAGGAGGCTGCAGATAGGAGGCTTATGGGCCTCATATGTGAAACAAAAGGAGATCATGAAGCTGCGCTCGAGCATCTAGTTTTAGCCAGCATGGCGATGGTGGCAAATGGCCAAGAAACTGATGTGGCTGCAGTTGATTGCAGTATTGGAGATTCATACTTATCCTTGTCCCGTTACGATGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAGACCACCAAGGGAGAAAACCATCCAGCAGTTGGTTCAGTATATGTTCGTCTCGCTGATTTGTACAACAAGACTGGAAAAATGAGGGAGTCAGTATCGTACTGTGAAAATGCCCTACGAATTTATGAAAAGCCTGTCCCTGGGATTCCTCCGGAGGAGATTGCTAGTGGTCTCACTGATATTGCTGCTATTTATGAATCAATGAATGAAGTTGAGCAAGCAGTCAAATTATTACAGAAGGCATTGAAGATATATAATGATGCCCCAGGACAGCAAAACACCATTGCTGGAATTGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAACTATTCTGAATCTTACGAGTCCTTCAAGAACGCAATTCCAAAGCTCCGCAACAGCGGGGAGAAAAAATCTGCTTTCTTTGGTATAGCCCTTAATCAAATGGGGCTTGTGTGTGTTCAGAAATACGCTATAAACGAAGCTGTGGAGTTGTTCGAAGAAGCCAAGAGCATATTAGAACAAGAATATGGACCTTATCATCCTGATACTCTCGGTGTATATAGCAACCTCGCTGGAACTTACGATGCGGTTGGCAGGTTGGATGATGCAATAGAACTCTTGGAGTATGTTGTTGGCATGCGGGAGGAAAAACTCGGGACAGCCAATCCTGACGTCGACGATGAGAAGAGGAGGTTGTCCGAGTTGTTGAAAGAAGCCGGTAGAGTTCGGAGTCGAAAGGCGAGATCGCTCGAGACTCTTCTCGATTCCAATACTCATCATGTAAACGGTAAAGGTATTAAGGTTTGA 2220 43.83 MPGIVMDEVNDERAVNKHNGSSIHMEESYGNKSPRSGLSLQSHGSVHVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEDIVDVEKPENDFPSDFVKDSPSVDKKEKTENTQPGNSRRLSSGKKPSHFQLDHETSPKSSPRGKGLSDKPPISRKNEKNPKKTSPVAAQSKKQKDSPLRGPKVQNGTEDVNESLMDSPDLGPFLLKQARNLVSSGENLQKALVLALRAAKSFELSANGKPSLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLICYTTGLEVQKQVLGESDPRVGETYRYLAEAHVQALQFNAAEKFCHMALDIHQKNVGPASIEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVYVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNEVEQAVKLLQKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYESFKNAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGTYDAVGRLDDAIELLEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDSNTHHVNGKGIKV 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1578449 1582229 + Hsped.09g01980.1 Hepe09g0198 578882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0198 739 Pfam Tetratricopeptide repeat 443 519 - -
Hepe09g0198 739 Pfam Tetratricopeptide repeat 615 682 - -
Hepe09g0198 739 Gene3D Tetratricopeptide repeat domain 643 726 IPR011990 GO:0005515(InterPro)
Hepe09g0198 739 ProSiteProfiles TPR repeat profile. 571 604 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 Pfam Tetratricopeptide repeat 531 561 - -
Hepe09g0198 739 SMART tpr_5 530 563 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 SMART tpr_5 571 604 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 SMART tpr_5 321 354 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 SMART tpr_5 445 478 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 SMART tpr_5 655 688 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 SMART tpr_5 613 646 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 SMART tpr_5 487 520 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 SMART tpr_5 363 396 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 SMART tpr_5 278 311 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 MobiDBLite consensus disorder prediction 81 146 - -
Hepe09g0198 739 Gene3D Tetratricopeptide repeat domain 434 613 IPR011990 GO:0005515(InterPro)
Hepe09g0198 739 MobiDBLite consensus disorder prediction 1 42 - -
Hepe09g0198 739 MobiDBLite consensus disorder prediction 21 42 - -
Hepe09g0198 739 MobiDBLite consensus disorder prediction 158 172 - -
Hepe09g0198 739 Coils Coil 543 563 - -
Hepe09g0198 739 SUPERFAMILY TPR-like 243 572 IPR011990 GO:0005515(InterPro)
Hepe09g0198 739 Coils Coil 696 716 - -
Hepe09g0198 739 Gene3D Tetratricopeptide repeat domain 237 433 IPR011990 GO:0005515(InterPro)
Hepe09g0198 739 SUPERFAMILY TPR-like 448 683 IPR011990 GO:0005515(InterPro)
Hepe09g0198 739 ProSiteProfiles TPR repeat profile. 530 563 IPR019734 GO:0005515(InterPro)
Hepe09g0198 739 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 733 - -
Hepe09g0198 739 MobiDBLite consensus disorder prediction 67 228 - -
Hepe09g0198 739 ProSiteProfiles TPR repeat profile. 445 478 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0198 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0836 Hepe-Chr7:10537973 Hepe09g0198 Hepe-Chr9:1578449 3.66e-235 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48