Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0208 ATGGCGGATCTTTACGGACTCCATCCCTTCGCCGATCATTACTTTTACCAGTCATCTTCAGCGCCGCCGCCCTTCGAGAATCTCGTCCTTCCGGTTAGTTATCAAACCTATTCTACTGCTTCTGCCGATTATTCTCATCGGCTTCCGCCTTTTGGATCGGAATACTTGCCGTCGGTTTCGTCGCCAGTTGTCTCCGATGCTGATTTAGCGGCGGCGCGTGCTTTCGAGGAGGAGTCTTCCAGAGGTGCAATAATTAGAGCCAAAATTGCTTCTCATCCTCTTTACCCTAAGCTTGTCGATGCGTTCGTGGACTGCCAAAAGGTCGGTGCACCGCCGGAGATCGCTAACATTCTAGACAACAGCAATCGTGGAAGCGGCATCGGGAAAAGGACTTCCGGCGATTCAACTTTCTTGGGTGCCGATCCCGAACTCGATGAGTTCATGGAAACGTACTGCGGAATACTGGCGAAGTACAAGTTGGACCTCTCACAGCCCTTCGTTGAAGCATCTTCCTTCCTCAACAATATGGAAATGCAGTTAAACGGGTTATGTAACGGCATCACCAGAGGCTACGTTTCCGATGAAGCTGCTGCTGGTTCATCGGAAGAGGAAGTAAGCGTCGGAGACGTAGAATTGCAGGACTCTCAGTTGGGAAATGAAAATGAAGATCGTGAGCTTAAGGATCGACTCCTACGCAAGTATGGTGGTTATATTAGCAGCTTAAAGCACGAATTCTCAAAATCTAAAAAAAAGGTAAAGCTACCCAAAGAAGCAAGACAGATCATGCTTGACTGGTGGAACATCCATTCCAAATGGCCTTACCCCACTGAGACGGACAAAGTTGAGTTGGCGGAGACGACAGGGTTAGACCAAAAACAAATAAACAACTGGTTCATAAACCAGAGGAAACGGCATTGGAAACCATCGGAAAATATGCATTTTGCTGTTATGAATGGTCTTTACGGACCCCTTACCATGGATGAATAA 987 47.62 MADLYGLHPFADHYFYQSSSAPPPFENLVLPVSYQTYSTASADYSHRLPPFGSEYLPSVSSPVVSDADLAAARAFEEESSRGAIIRAKIASHPLYPKLVDAFVDCQKVGAPPEIANILDNSNRGSGIGKRTSGDSTFLGADPELDEFMETYCGILAKYKLDLSQPFVEASSFLNNMEMQLNGLCNGITRGYVSDEAAAGSSEEEVSVGDVELQDSQLGNENEDRELKDRLLRKYGGYISSLKHEFSKSKKKVKLPKEARQIMLDWWNIHSKWPYPTETDKVELAETTGLDQKQINNWFINQRKRHWKPSENMHFAVMNGLYGPLTMDE 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1730709 1737693 + Hsped.09g02080.1 Hepe09g0208 578892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0208 328 ProSiteProfiles ELK domain profile. 225 245 IPR005539 GO:0003677(InterPro)
Hepe09g0208 328 Gene3D - 250 311 - -
Hepe09g0208 328 ProSiteProfiles 'Homeobox' domain profile. 245 308 IPR001356 GO:0003677(InterPro)
Hepe09g0208 328 CDD homeodomain 257 309 IPR001356 GO:0003677(InterPro)
Hepe09g0208 328 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 128 315 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe09g0208 328 SMART HOX_1 247 312 IPR001356 GO:0003677(InterPro)
Hepe09g0208 328 SMART ELK_2 225 246 IPR005539 GO:0003677(InterPro)
Hepe09g0208 328 Pfam KNOX2 domain 139 184 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe09g0208 328 Pfam ELK domain 225 246 IPR005539 GO:0003677(InterPro)
Hepe09g0208 328 ProSitePatterns 'Homeobox' domain signature. 283 306 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe09g0208 328 SMART KNOX1_2 83 127 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe09g0208 328 SMART KNOX2_2 134 185 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe09g0208 328 Pfam Homeobox KN domain 265 304 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe09g0208 328 SUPERFAMILY Homeodomain-like 247 321 IPR009057 -
Hepe09g0208 328 Pfam KNOX1 domain 85 122 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2254 Hepe-Chr8:62294805 Hepe09g0208 Hepe-Chr9:1730709 5.95e-86 dispersed
Hepe09g0208 Hepe-Chr9:1730709 Hepe10g0232 Hepe-Chr10:2468647 3.55e-29 dispersed
Hepe10g0032 Hepe-Chr10:293584 Hepe09g0208 Hepe-Chr9:1730709 3.11e-96 wgd
Hepe10g1622 Hepe-Chr10:52932223 Hepe09g0208 Hepe-Chr9:1730709 2.97e-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56326 PF03791 KNOX2 5.20E-21 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0208 - - - 0.0