Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe09g0208 | ATGGCGGATCTTTACGGACTCCATCCCTTCGCCGATCATTACTTTTACCAGTCATCTTCAGCGCCGCCGCCCTTCGAGAATCTCGTCCTTCCGGTTAGTTATCAAACCTATTCTACTGCTTCTGCCGATTATTCTCATCGGCTTCCGCCTTTTGGATCGGAATACTTGCCGTCGGTTTCGTCGCCAGTTGTCTCCGATGCTGATTTAGCGGCGGCGCGTGCTTTCGAGGAGGAGTCTTCCAGAGGTGCAATAATTAGAGCCAAAATTGCTTCTCATCCTCTTTACCCTAAGCTTGTCGATGCGTTCGTGGACTGCCAAAAGGTCGGTGCACCGCCGGAGATCGCTAACATTCTAGACAACAGCAATCGTGGAAGCGGCATCGGGAAAAGGACTTCCGGCGATTCAACTTTCTTGGGTGCCGATCCCGAACTCGATGAGTTCATGGAAACGTACTGCGGAATACTGGCGAAGTACAAGTTGGACCTCTCACAGCCCTTCGTTGAAGCATCTTCCTTCCTCAACAATATGGAAATGCAGTTAAACGGGTTATGTAACGGCATCACCAGAGGCTACGTTTCCGATGAAGCTGCTGCTGGTTCATCGGAAGAGGAAGTAAGCGTCGGAGACGTAGAATTGCAGGACTCTCAGTTGGGAAATGAAAATGAAGATCGTGAGCTTAAGGATCGACTCCTACGCAAGTATGGTGGTTATATTAGCAGCTTAAAGCACGAATTCTCAAAATCTAAAAAAAAGGTAAAGCTACCCAAAGAAGCAAGACAGATCATGCTTGACTGGTGGAACATCCATTCCAAATGGCCTTACCCCACTGAGACGGACAAAGTTGAGTTGGCGGAGACGACAGGGTTAGACCAAAAACAAATAAACAACTGGTTCATAAACCAGAGGAAACGGCATTGGAAACCATCGGAAAATATGCATTTTGCTGTTATGAATGGTCTTTACGGACCCCTTACCATGGATGAATAA | 987 | 47.62 | MADLYGLHPFADHYFYQSSSAPPPFENLVLPVSYQTYSTASADYSHRLPPFGSEYLPSVSSPVVSDADLAAARAFEEESSRGAIIRAKIASHPLYPKLVDAFVDCQKVGAPPEIANILDNSNRGSGIGKRTSGDSTFLGADPELDEFMETYCGILAKYKLDLSQPFVEASSFLNNMEMQLNGLCNGITRGYVSDEAAAGSSEEEVSVGDVELQDSQLGNENEDRELKDRLLRKYGGYISSLKHEFSKSKKKVKLPKEARQIMLDWWNIHSKWPYPTETDKVELAETTGLDQKQINNWFINQRKRHWKPSENMHFAVMNGLYGPLTMDE | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1730709 | 1737693 | + | Hsped.09g02080.1 | Hepe09g0208 | 578892 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe09g0208 | 328 | ProSiteProfiles | ELK domain profile. | 225 | 245 | IPR005539 | GO:0003677(InterPro) | |
Hepe09g0208 | 328 | Gene3D | - | 250 | 311 | - | - | |
Hepe09g0208 | 328 | ProSiteProfiles | 'Homeobox' domain profile. | 245 | 308 | IPR001356 | GO:0003677(InterPro) | |
Hepe09g0208 | 328 | CDD | homeodomain | 257 | 309 | IPR001356 | GO:0003677(InterPro) | |
Hepe09g0208 | 328 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 128 | 315 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Hepe09g0208 | 328 | SMART | HOX_1 | 247 | 312 | IPR001356 | GO:0003677(InterPro) | |
Hepe09g0208 | 328 | SMART | ELK_2 | 225 | 246 | IPR005539 | GO:0003677(InterPro) | |
Hepe09g0208 | 328 | Pfam | KNOX2 domain | 139 | 184 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe09g0208 | 328 | Pfam | ELK domain | 225 | 246 | IPR005539 | GO:0003677(InterPro) | |
Hepe09g0208 | 328 | ProSitePatterns | 'Homeobox' domain signature. | 283 | 306 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Hepe09g0208 | 328 | SMART | KNOX1_2 | 83 | 127 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe09g0208 | 328 | SMART | KNOX2_2 | 134 | 185 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe09g0208 | 328 | Pfam | Homeobox KN domain | 265 | 304 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Hepe09g0208 | 328 | SUPERFAMILY | Homeodomain-like | 247 | 321 | IPR009057 | - | |
Hepe09g0208 | 328 | Pfam | KNOX1 domain | 85 | 122 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe08g2254 | Hepe-Chr8:62294805 | Hepe09g0208 | Hepe-Chr9:1730709 | 5.95e-86 | dispersed | |
Hepe09g0208 | Hepe-Chr9:1730709 | Hepe10g0232 | Hepe-Chr10:2468647 | 3.55e-29 | dispersed | |
Hepe10g0032 | Hepe-Chr10:293584 | Hepe09g0208 | Hepe-Chr9:1730709 | 3.11e-96 | wgd | |
Hepe10g1622 | Hepe-Chr10:52932223 | Hepe09g0208 | Hepe-Chr9:1730709 | 2.97e-118 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56326 | PF03791 | KNOX2 | 5.20E-21 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe09g0208 | - | - | - | 0.0 |