Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0209 ATGACTGTAGGCAACGATTCCTTCCGCGCTTCTCCTGAGTGGAAGTTCTCTCAGGTCTTCGGCGGACGAGTTGCCGGAGAAGATATTCAGGATGTTGATACCCTCTCTGCAATTGGATTTGATAAGACTGGTGATAACCTTGCCATTGGCGATCGAGGTGGTCGTGTTATTATATTTGAAAGAAACGACGGGAAGGATACTTCGAAGAACTTCTATACACGGAAAAGGTTGGAGCAGTTGAATCTTACTCCCGCCCGGCATCCTGAATACCAGTACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAGGAGTGTGGAAATCGAAGAGAAGATCAATAAAGTGAGGTGGTGTGTATCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGACAAGACTATTAAACTATGGAAGGTTAAGGATCATAAGGTGAAAACCGTTAAAGAGATGAACCCCAATCGATTTCTGAGTTCAGAGAATGCACTTTTGGCAGAAATTAGTTTTAATAGCAAACAAGACAAACTACAATCTCCTTCCAATGGCTGCCATTGGGAATGGTCAGAGAATATGCCAATGAACAAAGTAGCGTCTAAAGACATTCATGACATGATTGCTGATCAAGACAACGCTTCTCGGAGAAGATGCCGAAAGGTGTATGCTCATGCTCATGATTTTAATATTAACTCCATTTCTAACAACAGTGATGGTGAGACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTTGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACAGAGATCATAACGTCGGCTGAATTCCATCCTCTGCACTGTAATCTTCTTGCGTACAGCAGCTCAAGGGGTTTTATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATCATAGTGCATTTCTATTACGAGCTGAAGAATTAAATCGACCGAAATCATTTTTTACGGAGATCATTTCATCCATTTCGGATATTAAATTTTCGAGTGATGGGCGGTTTATTATTAGCCGGGATTACATGAATTTAAAGCTTTGGGATATCCACAAGTGTTCTTCTCCAGTTGCAGTATTCAAGATTCATGAGCACCTGCGACCTAGATTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCAGACGGGCTTCACTTTGCAACTGGATCTTATAGCAACCAATTACGGGTGTTCTCTTATGGCTCTGGAAGTTCGGAAGGTAGCACTACTGAAGCTGGAAAGATTCCCGATAGGAAACCAAATCTCCAAACCACTCGTCGGGCTAGAAGGTCATCGTTAAGCAATTTGACACGTGAATTTTTTCGCCACGGCAATGAACATTCAAGCTCAGGAAGTAATGAAGCTTCAGTTGACCTGAACTCCAAGTTACTACATTTAGCATGGCATCCAACAGAAAATTTAATCGCATGTGCTGCTGGAAGTGGCCTGTTCATGTATTATGCGTAG 1533 41.68 MTVGNDSFRASPEWKFSQVFGGRVAGEDIQDVDTLSAIGFDKTGDNLAIGDRGGRVIIFERNDGKDTSKNFYTRKRLEQLNLTPARHPEYQYKTEFQSHEPEFDYLRSVEIEEKINKVRWCVSPNGSRFILSTNDKTIKLWKVKDHKVKTVKEMNPNRFLSSENALLAEISFNSKQDKLQSPSNGCHWEWSENMPMNKVASKDIHDMIADQDNASRRRCRKVYAHAHDFNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDHSAFLLRAEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNQLRVFSYGSGSSEGSTTEAGKIPDRKPNLQTTRRARRSSLSNLTREFFRHGNEHSSSGSNEASVDLNSKLLHLAWHPTENLIACAAGSGLFMYYA 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1739042 1745186 + Hsped.09g02090.1 Hepe09g0209 578893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0209 510 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 30 190 - -
Hepe09g0209 510 MobiDBLite consensus disorder prediction 427 452 - -
Hepe09g0209 510 Pfam WD domain, G-beta repeat 120 141 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 Pfam WD domain, G-beta repeat 220 255 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 Gene3D - 69 310 IPR015943 GO:0005515(InterPro)
Hepe09g0209 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 151 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 227 254 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 394 420 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 340 367 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 312 339 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 368 393 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 479 508 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 118 146 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 255 282 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 283 311 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 13 510 IPR000009 GO:0000159(PANTHER)|GO:0000159(InterPro)|GO:0005829(PANTHER)|GO:0019888(InterPro)|GO:0019888(PANTHER)
Hepe09g0209 510 Gene3D - 311 507 IPR015943 GO:0005515(InterPro)
Hepe09g0209 510 SMART WD40_4 259 306 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 SMART WD40_4 216 255 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 SMART WD40_4 390 421 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 SMART WD40_4 108 142 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 SMART WD40_4 325 363 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 SMART WD40_4 25 60 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 SMART WD40_4 472 510 IPR001680 GO:0005515(InterPro)
Hepe09g0209 510 PIRSF PPA2_B55 5 510 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Hepe09g0209 510 SUPERFAMILY WD40 repeat-like 33 506 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0209 K04354 - - csv:101206601 895.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0209 Hepe-Chr9:1739042 Hepe02g1474 Hepe-Chr2:19108400 9.06e-201 transposed
Hepe09g0209 Hepe-Chr9:1739042 Hepe03g1477 Hepe-Chr3:71546358 1.28e-200 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36