Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0225 ATGACTTTGGAAGATATCATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAATTCTTGAGAAGAAAATGCATGCCAGGATGCATTTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGAGCCAGCAATGTGACAAAGCTCCTGAATGAGCTCCTCCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCCTACGAGGCCGAGGCCCGAGTCCGAGACCCGGTCTATGGCTGCGTCGGAGCCATCTCGTTCCTCCAAAGGCAAGTCCAGAGGCTGCAGAAGGAACTCGATACTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATCCCTAATGCAGGGGCCGGGGTGAGTAGTCAGCCAATTCCCGGCCTTCGCCCGAGGGCGGCGGCTTTCGATCAATATAATACAAGAGTTGTTGTAGGTAATGAAGGGACATCATCAAGTGGATATTATAACCAACATCTTCCAGCTTTCCCCATGGCTTATCCACTCCCTTGGAATGAAAATTCATCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA 600 48.5 MTLEDIMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDTANADLIRYACNEIPNAGAGVSSQPIPGLRPRAAAFDQYNTRVVVGNEGTSSSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1949857 1950548 - Hsped.09g02250.1 Hepe09g0225 578909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0225 199 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Hepe09g0225 199 Coils Coil 95 122 - -
Hepe09g0225 199 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Hepe09g0225 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1786 Hepe-Chr2:26266403 Hepe09g0225 Hepe-Chr9:1949857 1.72e-73 dispersed
Hepe08g0703 Hepe-Chr8:6338705 Hepe09g0225 Hepe-Chr9:1949857 6.06e-45 dispersed
Hepe08g0862 Hepe-Chr8:7832793 Hepe09g0225 Hepe-Chr9:1949857 1.67e-34 dispersed
Hepe09g0225 Hepe-Chr9:1949857 Hepe10g0823 Hepe-Chr10:16976909 1.63e-50 dispersed
Hepe02g3080 Hepe-Chr2:79972513 Hepe09g0225 Hepe-Chr9:1949857 5.92e-64 wgd
Hepe07g2205 Hepe-Chr7:66445971 Hepe09g0225 Hepe-Chr9:1949857 5.30e-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56328 PF03195 LOB 2.90E-42 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0225 - - - 0.0