Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0239 ATGGATAATGAAGATGGTAACACAAAGTTAGATGATCTTGAAACCCCTTTGGTTTCTTCTTCAGAGTCGTCTCAGATGGATTTTCATTTGAACAACAACTTGTTGAATTCGTCGGGGGTGGAAGAGGAGGTGATAATTAGAGAGATAAAGAAGCAGATGGGGCTGGCGGGTCCTCTGGTTTTGGTGAGCTTTTTGCAGTATAGTTTGCAGCTGATATCGATCATGTTCATTGGCCATCTTGGGGAGCTCCAACTCTCTGGTTCTTCAATGGCTTTCTCTTTTGCTGGAGTCACTGGCTTTAGTCTCTTGTTGGGAATGGGGAGTGCATTAGAGACATTATGTGGACAAGCCTATGGAGCAAAGCAATATCATATGCTCGGGATCCACATGCAGAGAGCCATGGTGGTTCTTTCACTTATCTGCATTCCCATAGCCCTTTTGTGGGCTTCCATTCAACAAATCTTCACCATTCTCAAACAGGATCCTCTCATTTCAGAGCAAGCTGGGATCTATGGCAGGTGGCTCATCCCCAGCATCATCCCTTATGGCCTTCTTCAGTGCCAATTCCGGTTCTTGCAGACCCAACATCTCACTTCTCCATTGTTGATTGCCACTGGAGCTTCCACTTTAATCCATCTTTTCCTTTGTTGGAGTTTGGTTTCTGGTTTTGGGTTTGGCATCAAAGGCGCTGCTTTCTCCTCCGCCATTACTTATTGGATCAATGTGCTGATTTTGGGTTTATATATCAAGTTTTCTCCTCAATGTCAAAAGACTTGGACTGGTTTCTCCATTGATGGAATCAAGAATTTGATTAACTTCTTGGCTTTGGCGGTTCCTTCTTCTCTCATGGTCTGCTTGGAGTACTGGTCGTACGAGTTTTTAGTTCTCATGTCAGGGCTTCTTCCCAATCCAGAGCTGGAAACGTCGATGTTATCAATCAGCTTGAGCACAAGTTCGCTGGTTTTCAGAATCGCCTATGGTTTCGGCAGTGCAGTGAGAGTTTCAAATGAGTTAGGGGCAGGAAAGCCATTGGCAGCTCGGCTAGCGGTGAAGGTAGTTGTGCTTTTGGGGTTAGCAGAAGGAATGACATTAGGGGTTTTACTAATTGCACTCAGAAACATATGGGGTTATATCTTCACAAATGAAGAAGAAGTTATCAAATATTTGAGTATGATCATGCCAATACTCGCCATTTCCAACTTCATGGACGCCATCCAGGGCGTCCTTTCAGGGACAGCTAGAGGATGTGGATGGCAGAAGATAGGGGCATGGGTGAATCTTGGAGCTTATTACTTAGTTGGGTTGCCTTCTGCCATAATCCTCACTTTTGTGTTTCATTTTGGAGGGAAGGGACTATGGATGGGAATCACATGTGGAAGTTGTCTACAATCCGTACTGCTTTTGTTCATTACTTTTAACACAAATTGGGAGGACCAGGCACGCAAAGCAAAGCAAAGAATAATGTATGATTCAAGTCTTCCTACAAGTACAACAACCCTTTTACAATAA 1509 44.0 MDNEDGNTKLDDLETPLVSSSESSQMDFHLNNNLLNSSGVEEEVIIREIKKQMGLAGPLVLVSFLQYSLQLISIMFIGHLGELQLSGSSMAFSFAGVTGFSLLLGMGSALETLCGQAYGAKQYHMLGIHMQRAMVVLSLICIPIALLWASIQQIFTILKQDPLISEQAGIYGRWLIPSIIPYGLLQCQFRFLQTQHLTSPLLIATGASTLIHLFLCWSLVSGFGFGIKGAAFSSAITYWINVLILGLYIKFSPQCQKTWTGFSIDGIKNLINFLALAVPSSLMVCLEYWSYEFLVLMSGLLPNPELETSMLSISLSTSSLVFRIAYGFGSAVRVSNELGAGKPLAARLAVKVVVLLGLAEGMTLGVLLIALRNIWGYIFTNEEEVIKYLSMIMPILAISNFMDAIQGVLSGTARGCGWQKIGAWVNLGAYYLVGLPSAIILTFVFHFGGKGLWMGITCGSCLQSVLLLFITFNTNWEDQARKAKQRIMYDSSLPTSTTTLLQ 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2076335 2082733 + Hsped.09g02390.1 Hepe09g0239 578923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0239 502 Pfam MatE 279 439 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Hepe09g0239 502 Pfam MatE 58 217 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Hepe09g0239 502 CDD MATE_eukaryotic 48 482 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Hepe09g0239 502 MobiDBLite consensus disorder prediction 1 23 - -
Hepe09g0239 502 PANTHER MULTIDRUG RESISTANCE PROTEIN 43 479 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Hepe09g0239 502 NCBIfam MATE family efflux transporter 58 453 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0239 K03327 - - csv:101222547 728.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0315 Hepe-Chr6:11095864 Hepe09g0239 Hepe-Chr9:2076335 1.45e-134 dispersed
Hepe06g0318 Hepe-Chr6:11245286 Hepe09g0239 Hepe-Chr9:2076335 2.30e-135 dispersed
Hepe07g1025 Hepe-Chr7:14585524 Hepe09g0239 Hepe-Chr9:2076335 6.57e-108 dispersed
Hepe07g1026 Hepe-Chr7:14605053 Hepe09g0239 Hepe-Chr9:2076335 1.98e-96 dispersed
Hepe08g2151 Hepe-Chr8:60719783 Hepe09g0239 Hepe-Chr9:2076335 7.11e-165 dispersed
Hepe09g0239 Hepe-Chr9:2076335 Hepe10g0465 Hepe-Chr10:5346171 1.78e-97 dispersed
Hepe09g0239 Hepe-Chr9:2076335 Hepe01g1148 Hepe-Chr1:76602796 4.59e-153 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g255 . . . . . . . . . . Cma10g00316 Cma11g00297 . . . . . Bhi02g00115 . . . Hepe09g0239 . . Cla06g01437 Cam06g1592 Cec06g1652 Cco06g1644 Clacu06g1553 Cmu06g1508 Cre06g2318 . . . . . . . . . . . . Bpe07g01043 . . . . Cmo10g00340 Cmo11g00302 . . . . . . . . . . . . . . . . . . . . . Csa01g00419 Chy02g02327 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153