Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0275 ATGGCGCAAACCGCAACATCAGGTGGCATTTCGAAGATTTTGGCGAATCCATCCCCGGATTCTCCCTCCGATACTCCACAAGTCGTGGTTCAAGTCCTCGATCTCAAGGGCACGGGAAATCGCTACATGTTTACTGCAAACGACGGAGATATGAAGCTAAAAGCTATTCTTCCATCAAACCTAACTTCTGAGGTTATATCTGGAAACATTCAAAATTTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATCCCGAACAAGTCAGAAAAGTATCTAATTGTGACGAAATGTGAGGTGGTTTCTCCTGCTCTAGAAAAGGAGGTAAAAACTGAGGTTAAGAAAGAGGATGCAGGCATTGTTTTGAAACCGAAGCAAGAGTTTGACGATAAGAGTGCAATTAAGACTGGAGGTGGTATTCTTTTGAAGCCAAAACATGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTACGAATATGGCACCAACTGCGCGGATGTCAATGACAAGGCGAGTCCATCCCCTTGTCTACTTAAATCCTTACCAGGGAGATTGGACCATCAAAGTCCGTGTTACAGACAAGGGAAACCTACGTACATACAAGAATGCTAATGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACGATGTTCAATGAAGCTGCAAGGAAGTTCTATGAAAAGTTTGCCCTTGGCAAAGTTTATTACATTTCCAGGGGAAATTTGAAAGTGGCTAATAAGAAATTTATGACAGTTCAAAATGATTATGAAATGACTTTAAATGTGAATTCTGAAGTAGATGAGGTCAGCAGTGAAGCTGCTTTTGTTCCTGAAACAAAATTTAATTTTGTCAAGATTGATATGCTAGGTCCTCACGTGAATGGAAGGGACCTTGTTGATGTTATTGGAGTTGTTCAAAGTGTTTCTCCTACAATGAGCATTCGAAGGAAAATCAACAATGAGACATCTCCAAAACGTGATATAACTATTGCTGATGAGACGAAGAAGACAGTTGTGGTATCTTTGTGGAATGATCTTGCGACTGGTGTGGGCCAGGAGTTGCTTGACATTGCCGATCAATCTCCTATAATTGCATTGAAGTATCTTAGAGTTGGAGATTTTCAAGGTGTATCTTTGTCTACAATAAGTAGGAGCACAATTTTGATAAATCCAGACATAAAGGAAGCAAAAGATTTGAGATCCTGGTATGACTCTGAAGGAAAAGCCACAACCATGGCTTCTGTCAGCTCAGGACTGAGCCCATCGTCCAAGAGTGGGTTGAGGTCCATGTACTCTGATCGCATTTCCCTGTCTCATATACTTGAAAACAAATCTTTGGGAGAAGAAAAGCCCATGTTCTTCAGCATTAGAGCAAATATCAGCTTCATTAAGCCTGAACAAACAATGTCTTATCGGGCTTGTAAAACATGCAACAAGAAGGTGACTGAAGCCATTGGATCTGGATATTGGTGCGAAGGCTGCCAGAAAAATGTTGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAAAGTTTCTGATGCAAGTGGTGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGGATTGTTGGATGCTCTGCTGATGAGCTTGACCAGCTCAAATCACAGATTGGAGAGGAGAATTCATATCAACTGAAACTCAAAGAAGCCACTTGGGTTCCCCATTTGTTTCGAGTTAGTGTTTCTCAGAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCAGTTGCTCCAGTTGATTATGCTGCTGAATCCAAATTTTTGCTAGAAGAAATAGCAAAGATGAAAGCTTCCTAA 1872 40.97 MAQTATSGGISKILANPSPDSPSDTPQVVVQVLDLKGTGNRYMFTANDGDMKLKAILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKSEKYLIVTKCEVVSPALEKEVKTEVKKEDAGIVLKPKQEFDDKSAIKTGGGILLKPKHELVAKSAAQIVHEQRTNMAPTARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNANGEGCVFNVVLTDEDGTQIQATMFNEAARKFYEKFALGKVYYISRGNLKVANKKFMTVQNDYEMTLNVNSEVDEVSSEAAFVPETKFNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETSPKRDITIADETKKTVVVSLWNDLATGVGQELLDIADQSPIIALKYLRVGDFQGVSLSTISRSTILINPDIKEAKDLRSWYDSEGKATTMASVSSGLSPSSKSGLRSMYSDRISLSHILENKSLGEEKPMFFSIRANISFIKPEQTMSYRACKTCNKKVTEAIGSGYWCEGCQKNVEECSLRYIMVVKVSDASGEAWFSTFNEEAERIVGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDYAAESKFLLEEIAKMKAS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2352005 2355697 + Hsped.09g02750.1 Hepe09g0275 578959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0275 623 FunFam Replication protein A subunit 176 285 - -
Hepe09g0275 623 CDD RPA1_DBD_A 179 282 - -
Hepe09g0275 623 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Hepe09g0275 623 FunFam Replication protein A subunit 289 428 - -
Hepe09g0275 623 Gene3D - 174 282 IPR012340 -
Hepe09g0275 623 Gene3D - 5 112 IPR012340 -
Hepe09g0275 623 FunFam Replication protein A subunit 433 620 - -
Hepe09g0275 623 Pfam Replication protein A OB domain 309 404 IPR031657 -
Hepe09g0275 623 Gene3D - 431 620 IPR012340 -
Hepe09g0275 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Hepe09g0275 623 SUPERFAMILY Nucleic acid-binding proteins 178 285 IPR012340 -
Hepe09g0275 623 SUPERFAMILY Nucleic acid-binding proteins 446 620 IPR012340 -
Hepe09g0275 623 Pfam OB-fold nucleic acid binding domain 190 274 IPR004365 GO:0003676(InterPro)
Hepe09g0275 623 CDD RPA1_DBD_C 454 619 IPR047192 -
Hepe09g0275 623 FunFam Replication protein A subunit 4 114 - -
Hepe09g0275 623 Gene3D - 290 430 IPR012340 -
Hepe09g0275 623 NCBIfam replication factor-a protein 1 (rpa1) 4 619 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe09g0275 623 Coils Coil 538 558 - -
Hepe09g0275 623 MobiDBLite consensus disorder prediction 1 25 - -
Hepe09g0275 623 SUPERFAMILY Nucleic acid-binding proteins 295 423 IPR012340 -
Hepe09g0275 623 CDD RPA1_DBD_B 312 418 - -
Hepe09g0275 623 PANTHER REPLICATION FACTOR A 1, RFA1 178 597 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Hepe09g0275 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0275 K07466 - - csv:101208545 1088.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0390 Hepe-Chr3:5614474 Hepe09g0275 Hepe-Chr9:2352005 1.70e-10 dispersed
Hepe08g2687 Hepe-Chr8:68915234 Hepe09g0275 Hepe-Chr9:2352005 3.27e-97 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g667 . . Bda06g00521 . Bpe12g00524 . . Bma12g00964 . . . . . Car11g00189 Sed08g0277 . Cpe04g01458 Bhi02g00093 Tan09g2042 Cmetu02g0517 . Hepe09g0275 . . Cla06g01537 Cam06g1696 Cec06g1758 Cco06g1757 Clacu06g1663 Cmu06g1609 Cre06g2422 . . . . . . . . . Blo15g00339 . . Bpe07g00755 . . Bma08g00242 . . Cmo11g00212 . . . . . . . . . . . . . . . . . . . . Lsi06g01410 Csa01g00297 Chy02g02440 Cme02g01827
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0483 . 59 785 Core DNA Replication Machinery Family AT4G14700 66.1 2.2e-275 945.3
Hepe06g0483 . 93 785 Core DNA Replication Machinery Family AT4G12620 69.9 1.9e-282 968.8
Hepe10g0715 . 2 361 Core DNA Replication Machinery Family AT2G37560 66.7 3.3e-143 505.0
Hepe01g0676 . 2 334 Core DNA Replication Machinery Family AT2G01120 65.3 5.8e-126 448.0
Hepe03g0562 . 3 535 Core DNA Replication Machinery Family AT4G29910 56.7 2.2e-168 589.3
Hepe01g0525 . 1 281 Core DNA Replication Machinery Family AT1G26840 66.0 4.0e-94 341.7
Hepe08g2041 . 5 803 Core DNA Replication Machinery Family AT1G79150 57.8 1.7e-241 832.8
Hepe02g0024 . 5 794 Core DNA Replication Machinery Family AT1G79150 57.5 5.9e-239 824.3
Hepe05g1030 . 1 939 Core DNA Replication Machinery Family AT1G44900 74.7 0.0e+00 1339.3
Hepe04g1984 . 1 575 Core DNA Replication Machinery Family AT5G46280 79.3 3.1e-263 904.4
Hepe02g0482 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.6 0.0e+00 1183.7
Hepe08g2481 . 1 737 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1099.3
Hepe07g2577 . 61 893 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1193.7
Hepe09g1860 . 62 894 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1171.4
Hepe04g2123 . 59 797 Core DNA Replication Machinery Family AT5G44635 60.4 1.2e-266 916.4
Hepe09g1857 . 18 543 Core DNA Replication Machinery Family AT5G44635 69.3 9.5e-200 694.1
Hepe09g1855 . 7 316 Core DNA Replication Machinery Family AT5G44635 71.9 5.9e-125 445.7
Hepe09g1861 . 3 270 Core DNA Replication Machinery Family AT5G44635 73.1 3.3e-112 403.3
Hepe03g1834 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1205.7
Hepe09g0663 . 40 509 Core DNA Replication Machinery Family AT2G29680 58.1 1.9e-155 546.2
Hepe09g0663 . 42 470 Core DNA Replication Machinery Family AT1G07270 58.0 4.3e-138 488.4
Hepe03g1305 . 252 844 Core DNA Replication Machinery Family AT3G25100 77.0 9.0e-258 886.3
Hepe05g0235 . 53 834 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.5
Hepe02g0733 . 16 636 Core DNA Replication Machinery Family AT2G14050 78.4 4.2e-285 977.2
Hepe08g0291 . 1 410 Core DNA Replication Machinery Family AT2G20980 55.3 1.8e-116 416.4
Hepe01g1589 . 1 973 Core DNA Replication Machinery Family AT1G77320 51.0 2.7e-262 902.1
Hepe03g1610 . 1 192 Core DNA Replication Machinery Family AT1G80190 64.6 2.4e-69 258.8
Hepe07g0357 . 24 168 Core DNA Replication Machinery Family AT3G12530 73.8 1.8e-61 232.3
Hepe07g1096 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 8.8e-61 229.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 8.4e-69 256.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 8.4e-69 256.9
Hepe08g0190 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 2.8e-51 198.7
Hepe08g1181 . 1 1539 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1745.3
Hepe10g1540 . 2 622 Core DNA Replication Machinery Family AT1G67630 62.0 2.3e-219 758.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe06g0251 . 3 445 Core DNA Replication Machinery Family AT5G41880 64.7 5.5e-175 610.9
Hepe04g1082 . 1 1086 Core DNA Replication Machinery Family AT5G63960 79.7 0.0e+00 1779.6
Hepe05g0526 . 1 437 Core DNA Replication Machinery Family AT2G42120 74.7 7.5e-201 696.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe08g0235 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.0 0.0e+00 2963.3
Hepe08g0235 . 9 2202 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2926.7
Hepe07g2561 . 13 288 Core DNA Replication Machinery Family AT5G22110 76.4 1.9e-128 456.4
Hepe07g2560 . 9 218 Core DNA Replication Machinery Family AT5G22110 56.7 1.1e-59 228.0
Hepe08g0185 . 1 925 Core DNA Replication Machinery Family AT5G22010 61.9 1.4e-305 1045.8
Hepe06g1212 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.4 7.2e-172 600.1
Hepe04g0589 . 1 354 Core DNA Replication Machinery Family AT5G27740 84.7 8.8e-176 613.2
Hepe02g2236 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 5.8e-154 540.8
Hepe08g2687 . 24 618 Core DNA Replication Machinery Family AT2G06510 68.1 1.0e-251 866.3
Hepe06g0960 . 34 702 Core DNA Replication Machinery Family AT2G06510 51.4 2.2e-198 689.1
Hepe09g0275 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 7.5e-244 840.1
Hepe06g0960 . 10 816 Core DNA Replication Machinery Family AT5G45400 51.9 5.3e-227 784.6
Hepe09g0275 . 1 618 Core DNA Replication Machinery Family AT5G61000 64.6 5.4e-237 817.4
Hepe06g0960 . 5 828 Core DNA Replication Machinery Family AT4G19130 52.6 1.5e-228 789.6
Hepe01g2077 . 1 267 Core DNA Replication Machinery Family AT2G24490 50.7 1.3e-70 263.5
Hepe09g1773 . 1 404 Core DNA Replication Machinery Family AT5G26680 83.2 4.8e-189 657.5
Hepe05g1820 . 1 1112 Core DNA Replication Machinery Family AT1G08840 53.1 8.9e-301 1030.0
Hepe05g1236 . 9 171 Core DNA Replication Machinery Family AT2G25100 69.9 5.6e-61 231.5
Hepe08g0926 . 1 794 Core DNA Replication Machinery Family AT1G08130 66.7 7.9e-294 1006.5
Hepe08g0926 . 194 794 Core DNA Replication Machinery Family AT1G49250 68.4 3.8e-241 831.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007473 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36