Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0286 ATGGGCCAAGAGAAAATTTCCGAAGAATCTGAGAATTACATAGTGCAGTTCAGTTGGAGAACGCTTGATTCTGAAGCAGTTGAATCAGCTCTTGGTTCTGCACATCTGCCTGCCTCTGGTGTGAGAACACTGACAGTTGAAAACTGGTTGAAGCTTTTGATCCCTGCAAAACTTCGAGCCATGGAAGTTAATACCTACATTGATCCATTGCACAGAATTCTCTTTCAAAGGGAATGCTACTCGGGTCGACAGCAAAGAATTGTACTCTTAGCACTGCTGATCTTTACGGCTTTCTATTCAACTGGGGCTTACGATCCATTGGATCCAAATGGAAACATAACAATCAAATGGGATATAGTCTCTTGGACGGCAGATGGATATGTTGCTGTAGTGGCAATGAACAATTTTCAGATGTACCGCCATATCAATTCACCAGGATGGACTCTAGGCTGGTCATGGGCCAAGAAAGAAGTCATATGGTCTATGGTAGGAGCTCAGACAACAGAGCAAGGAGATTGTTCCAAGTTCAAAGGAAACGTCCCTCACTGTTGCAAGAAAAGCCCAATAGTTGTTGATTTGCTCCCTGGTGTTCCTTACAACCAGCAATTCTCCAATTGCTGCAAGGGTGGAGTGTTGCCATCTTGGGGACAGGATCCAGCAGGTTCGGTTTCCGCCTTTCAGGTGAGTGTTGGGCTAGCCGGCACTACAAACAAAACTGTTAAGTTGCCGAAGAACTTCACTCTGCTCGGTCCAGGACCAGGCTACACATGTGGACCTGCAAAGATTGTGCCTTCTACAGTCTTCCTCACTCCTGATCGCCGGCGGAAAACTCAAGCACTAATGACATGGAATGTGACCTGCACTTACTCGCAATTTCTGGCCTCTAAAAACCCAACTTGCTGCGTATCACTCTCAACTTTCTACAATGATACGATCACGTCTTGCCCAACCTGTGCGTGTGGCTGCCAGAACAAACATAATTGTATGAAGAGTGGCTCAAAGCTATTGCACAAGGATGGAATAAATACTCCTAAAAAGGATAATGCACCTTTACTACAATGCACCCATCACATGTGTCCTATTCGAGTACACTGGCACGTAAAGATTAATTACAAAGATTACTGGCGTGTGAAGGTTGCGGTAACTAACTTCAACTATAGGATGAATTATACGCTGTGGACGCTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGATACGGGCATGTTCTATGGCATGAAATTCTACAACGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTGCAATCTGAAGTACTAATGAAGAAGGACCAGGATACTTTTACCTTCAAGCAGGGCTGGGCATTTCCTAGAAAAGTATACTTCAATGGCGACGAATGTCAGATGCCACCACCAGAATCATACCCATTTCTACCAAACTCTGCTCCAAGAGGCTCCAGTGCAGTTACCAAATTGACCACCTCCTTGCTTTTGATAATCTGGTTTTTGTGGTGA 1551 44.55 MGQEKISEESENYIVQFSWRTLDSEAVESALGSAHLPASGVRTLTVENWLKLLIPAKLRAMEVNTYIDPLHRILFQRECYSGRQQRIVLLALLIFTAFYSTGAYDPLDPNGNITIKWDIVSWTADGYVAVVAMNNFQMYRHINSPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKSPIVVDLLPGVPYNQQFSNCCKGGVLPSWGQDPAGSVSAFQVSVGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCMKSGSKLLHKDGINTPKKDNAPLLQCTHHMCPIRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDQDTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSAPRGSSAVTKLTTSLLLIIWFLW 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2451841 2455032 - Hsped.09g02860.1 Hepe09g0286 578970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0286 516 PIRSF COBRA 77 516 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Hepe09g0286 516 Pfam COBRA-like protein 127 290 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Hepe09g0286 516 PANTHER PROTEIN COBRA 91 510 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0286 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0921 Hepe-Chr2:11095838 Hepe09g0286 Hepe-Chr9:2451841 4.96e-280 dispersed
Hepe07g0518 Hepe-Chr7:5477028 Hepe09g0286 Hepe-Chr9:2451841 5.61e-164 dispersed
Hepe07g2448 Hepe-Chr7:68827158 Hepe09g0286 Hepe-Chr9:2451841 3.82e-206 dispersed
Hepe09g0285 Hepe-Chr9:2448414 Hepe09g0286 Hepe-Chr9:2451841 3.27e-233 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g445 . . Bda06g00512 Bda15g00631 . . . Bma12g00957 . . Cma10g00288 Cma11g00220 Car10g00270 Car11g00198 Sed08g0289 Cpe20g00086 Cpe04g01448 Bhi02g00080 Tan09g2022 Cmetu02g1379 . Hepe09g0286 . . Cla06g01530 Cam06g1687 Cec06g1749 Cco06g1747 Clacu06g1654 Cmu06g1601 Cre06g2413 . . . . Lsi02g00135 Csa01g00618 . . . . . . Bpe07g00746 . . Bma08g00250 . Cmo10g00306 Cmo11g00223 . . . . . Cpe18g00714 . . . . . . . . . . . . . . Lsi06g01401 Csa01g00340 Chy02g02402 Cme02g01812
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0285 . 48 447 COBRA Gene Family AT5G60920 79.6 4.1e-209 724.2
Hepe02g0922 . 42 479 COBRA Gene Family AT5G60920 69.2 6.3e-194 673.7
Hepe09g0286 . 115 514 COBRA Gene Family AT5G60920 68.9 1.7e-178 622.5
Hepe02g0921 . 64 459 COBRA Gene Family AT5G60920 67.9 2.2e-178 622.1
Hepe07g2448 . 19 416 COBRA Gene Family AT5G60920 61.7 1.1e-150 530.0
Hepe07g0518 . 57 442 COBRA Gene Family AT5G60920 54.8 7.6e-131 464.2
Hepe09g0285 . 18 452 COBRA Gene Family AT3G02210 74.1 1.4e-207 719.2
Hepe02g0922 . 12 485 COBRA Gene Family AT3G02210 67.6 1.2e-196 682.9
Hepe02g0921 . 38 462 COBRA Gene Family AT3G02210 66.6 3.4e-180 628.2
Hepe09g0286 . 87 513 COBRA Gene Family AT3G02210 66.5 3.7e-179 624.8
Hepe07g2448 . 5 412 COBRA Gene Family AT3G02210 60.2 1.6e-153 539.7
Hepe07g0518 . 27 458 COBRA Gene Family AT3G02210 54.7 5.8e-140 494.6
Hepe09g0285 . 16 446 COBRA Gene Family AT3G29810 73.9 5.8e-201 697.2
Hepe02g0922 . 26 485 COBRA Gene Family AT3G29810 66.1 6.6e-189 657.1
Hepe02g0921 . 47 461 COBRA Gene Family AT3G29810 66.5 2.6e-177 618.6
Hepe09g0286 . 98 496 COBRA Gene Family AT3G29810 67.7 5.4e-175 610.9
Hepe07g2448 . 7 419 COBRA Gene Family AT3G29810 59.5 2.9e-152 535.4
Hepe07g0518 . 39 456 COBRA Gene Family AT3G29810 53.8 6.9e-138 487.6
Hepe02g0921 . 42 372 COBRA Gene Family AT5G15630 83.4 6.9e-178 620.2
Hepe09g0286 . 92 423 COBRA Gene Family AT5G15630 83.4 7.7e-177 616.7
Hepe09g0285 . 31 361 COBRA Gene Family AT5G15630 73.5 4.2e-151 531.2
Hepe02g0922 . 27 357 COBRA Gene Family AT5G15630 68.3 6.3e-147 517.3
Hepe07g2448 . 5 323 COBRA Gene Family AT5G15630 64.3 4.7e-134 474.6
Hepe02g0922 . 8 218 COBRA Gene Family AT5G60950 58.2 2.4e-64 242.3
Hepe09g0285 . 18 224 COBRA Gene Family AT5G60950 56.3 2.6e-63 238.8
Hepe02g0921 . 41 240 COBRA Gene Family AT5G60950 54.2 3.3e-58 221.9
Hepe09g0286 . 111 291 COBRA Gene Family AT5G60950 56.4 1.8e-56 216.1
Hepe07g2448 . 15 195 COBRA Gene Family AT5G60950 50.3 1.7e-46 183.0
Hepe07g0518 . 30 439 COBRA Gene Family AT1G09790 59.6 3.2e-151 531.9
Hepe09g0286 . 101 494 COBRA Gene Family AT1G09790 53.7 3.3e-132 468.8
Hepe09g0285 . 32 432 COBRA Gene Family AT1G09790 53.1 7.5e-132 467.6
Hepe02g0921 . 36 444 COBRA Gene Family AT1G09790 51.5 5.3e-130 461.5
Hepe05g1403 . 31 645 COBRA Gene Family AT4G16120 65.7 8.8e-254 873.2
Hepe07g1196 . 67 676 COBRA Gene Family AT4G16120 53.6 7.8e-202 700.7
Hepe01g1303 . 22 469 COBRA Gene Family AT4G16120 54.4 6.5e-156 548.1
Hepe05g1403 . 6 651 COBRA Gene Family AT3G16860 61.9 7.6e-242 833.6
Hepe07g1196 . 58 668 COBRA Gene Family AT3G16860 51.1 2.3e-190 662.5
Hepe01g1303 . 22 485 COBRA Gene Family AT3G16860 51.6 4.6e-146 515.4
Hepe05g1403 . 9 632 COBRA Gene Family AT5G49270 61.8 1.1e-240 829.7
Hepe07g1196 . 59 661 COBRA Gene Family AT5G49270 51.4 2.5e-192 669.1
Hepe01g1303 . 23 491 COBRA Gene Family AT5G49270 50.6 1.1e-150 530.8
Hepe07g1196 . 1 680 COBRA Gene Family AT3G20580 59.6 6.6e-249 857.1
Hepe05g1403 . 24 647 COBRA Gene Family AT3G20580 53.2 6.1e-202 701.0
Hepe01g1303 . 26 492 COBRA Gene Family AT3G20580 61.6 4.4e-184 641.7
Hepe07g1196 . 51 681 COBRA Gene Family AT4G27110 60.7 2.9e-236 815.1
Hepe05g1403 . 27 647 COBRA Gene Family AT4G27110 52.0 1.6e-194 676.4
Hepe01g1303 . 26 468 COBRA Gene Family AT4G27110 63.3 1.7e-175 613.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73