Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0301 ATGGCGAAGCTGCTTCTCTATCTTCAAGCTCCCCATCTCGTCTCTTCCATCAATCGCGGAACCCTTTCATTCATTCTCTCCAAACCAATTCCATTCCCCTCATCTTCTTCTTCCTCCATACAATGCCGCTTCGCTCTCCCTCTCTCTCCGTCTCATGCTTCCCGCCGCAGCCTCTCCGTTCGAGCATTCGACGACTCTGCATCACAGACCAACCGCGTGGAAAACGAAGAACCAGCCGCTGAAAACGACTCTCCGATGACCAGTGAGGATTATCCAACCGGAGAATTCGAGTTCCAGAAGTTTGGCCTGTGGAGGACCTTTCTGGTGAAGCTTAAGATGCTGGTTGCATATCCTTGGGAGCGCGTTCGCAAGGGCAGCGTCTTGACTATGAAATTGCGAGGGCAGATATCCGATCAGCTAAAGAGCCGTTTCTCTTCAGGGCTTTCTCTACCTCAAATCTGCGAGAACTTTGCCAAAGCTGCATATGATCCTCGTATTTCTGGGATCTACTTGCAAATTGAGGGTCTAAATTGTGGGTGGGGTAAAGTTGAAGAAATTCGAAGGCATATCCTGAATTTCAAAAAATCAGGTAAATTTGTTGTTGCCTTTATTCCTACCTGTCAAGAGAAAGAATACTACCTGGCATGTGCATGTGAGGAGATATATGCCCCTCCAAGTGCTTATGTTTCTTTGTTTGGTTTGACTGTTCAAGCTTCATTTCTCAGAGGTGTTTTTGATAAAGTAGGGATTGAACCACAAGTGGAAAGGATAGGTAAATATAAAAGTGCTGGTGATCAACTAGCACGGAGAAATATGTCAGAAGAAAATTGTGAAATGTTGACGACATTGCTCGATAACATCTATGACAACTGGCTGGATAAAATTTCTTCAATAAAAGGAAAGAAAAAAGATGATATTGAAAGCTTTATTAACGAAGGAGTGTACCAAATAGAAAGACTAAAAGAAGATGGCTGGATCACCAACATACAGTATGAGGACGAGGTTCTCTCTATGCTAAGTGAAAGACTTGGACTGCCGAAGGATAAAAAAGTTCCCATGGTTGATTACAGGAAGTACTCTAGAGTTAGGCAATGGACCGTTGGTTTATCGGGAGGTGGAGACCAAATAGCTGTGATTAGAGCTGGAGGAAGCATTACTCGTGTAAGAAGTCCTTTAAGTGCTCCTAGTTCTGGTATTATTGGGGAGCAATTCATTGAGAAGATTCGGACAGTTAGAGAGTCGAAAAGATTCAAGGCTGCCATCATCAGAATCGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGACTTCTGGCTGCATCAAAACCTGTTGTTGCGTCCATGGCTGATGTGGCAGCCAGTGGAGGATACTATATGGCAATGGCAGCTGGGACAATTGTTGCAGAAAATCTAACCTTAACTGGTTCTATTGGAGTTGTCACAGGGAAGTTTAACTTGGGGAAACTATATGAAAAGATTGGCTTTAACAAGGAAATCATATCAAGGGGAAGATTTGCTGAGCTTTTTGCGGCTGAACAACGACCTTTCAGACCGGATGAAGCCGAACTCTTCGCCAAGTCTGCACAAAATGCGTACAAGCAGTTTCGGGACAAAGCAGCCTTTTCCAGATCCATGACTGTGGATGAGATGGAGAAAGTTGCACAAGGAAGGGTTTGGACTGGTAAAGATGCAGCGTCCCGTGGTTTAGTGGACGCTATCGGTGGATTTTCTCGGGCTGTTGCTATCGCAAAGCAGAAAGCCAACATTCCTCAAGACAGCCAGGTTAATCTTGTGGAATTATCGAGACCGTCGCCAACGCTACCGGAGATATTAAGCGGAGTAGGGAGTACAATAATTGGAGTTGATAGGACATTGAAGGAACTGATGCAAGACCTTGCTTTGTCAGAAGGAGTTCAAGCTCGGATGGAAGGGATTATGCTGCAAAGAATGGAGGGATTTTCTTATGGCAATCCCATCTTTAATTTGATTAAAGATTACTTCAGTTCCCTCTGA 2031 44.46 MAKLLLYLQAPHLVSSINRGTLSFILSKPIPFPSSSSSSIQCRFALPLSPSHASRRSLSVRAFDDSASQTNRVENEEPAAENDSPMTSEDYPTGEFEFQKFGLWRTFLVKLKMLVAYPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFAKAAYDPRISGIYLQIEGLNCGWGKVEEIRRHILNFKKSGKFVVAFIPTCQEKEYYLACACEEIYAPPSAYVSLFGLTVQASFLRGVFDKVGIEPQVERIGKYKSAGDQLARRNMSEENCEMLTTLLDNIYDNWLDKISSIKGKKKDDIESFINEGVYQIERLKEDGWITNIQYEDEVLSMLSERLGLPKDKKVPMVDYRKYSRVRQWTVGLSGGGDQIAVIRAGGSITRVRSPLSAPSSGIIGEQFIEKIRTVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMADVAASGGYYMAMAAGTIVAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRFAELFAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMTVDEMEKVAQGRVWTGKDAASRGLVDAIGGFSRAVAIAKQKANIPQDSQVNLVELSRPSPTLPEILSGVGSTIIGVDRTLKELMQDLALSEGVQARMEGIMLQRMEGFSYGNPIFNLIKDYFSSL 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2609181 2616003 - Hsped.09g03010.1 Hepe09g0301 578985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0301 676 PIRSF Protease_4_SppA 69 675 IPR004634 GO:0006465(InterPro)|GO:0008233(InterPro)|GO:0016020(InterPro)
Hepe09g0301 676 Gene3D - 371 519 - -
Hepe09g0301 676 Gene3D - 125 361 - -
Hepe09g0301 676 PANTHER PROTEASE 4 92 674 - -
Hepe09g0301 676 CDD S49_SppA_67K_type 128 341 IPR047217 -
Hepe09g0301 676 NCBIfam signal peptide peptidase SppA 387 591 IPR004635 GO:0006508(InterPro)|GO:0008233(InterPro)
Hepe09g0301 676 Pfam Peptidase family S49 444 595 IPR002142 GO:0006508(InterPro)|GO:0008233(InterPro)
Hepe09g0301 676 Pfam Peptidase family S49 193 342 IPR002142 GO:0006508(InterPro)|GO:0008233(InterPro)
Hepe09g0301 676 CDD S49_Sppa_N_C 375 590 IPR047272 -
Hepe09g0301 676 SUPERFAMILY ClpP/crotonase 113 332 IPR029045 -
Hepe09g0301 676 SUPERFAMILY ClpP/crotonase 364 581 IPR029045 -
Hepe09g0301 676 Gene3D - 520 648 - -
Hepe09g0301 676 MobiDBLite consensus disorder prediction 63 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0301 K04773 - - csv:101211243 1184.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g408 . . . . . . . . . . . Cma11g00235 . Car11g00212 Sed12g2036 . Cpe04g01437 Bhi02g00045 Tan09g1990 Cmetu02g0800 . Hepe09g0301 . . . . . . . . . . Cone16ag0253 . . . . . . . . . . . . . . . . Cmo11g00238 . . . . . . . . . . . . . . . . . . . . Lsi06g01380 Csa01g00322 Chy02g02419 Cme02g01796
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32