Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0316 ATGGAGCCGATGGACATAATTGGAAAATCTAAAGAGGACGCCTCGCTTCCAAAGGCAACTATGACTAAAATTATTAAAGAGATGTTGCCCCCTGATGTACGCGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCAGAGTCTAACGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAACACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATCGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGAAACTTCTCCAGCAAGACTCCTTGAAAGGTGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTCGCAGAGGCACGTGCAAGAATGAATGGTGGTAACACTGCTCCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 483 43.89 MEPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKLLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGNTAPKQPEPEQSLES 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2745568 2748419 + Hsped.09g03160.1 Hepe09g0316 579000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0316 160 PANTHER PROTEIN DR1 HOMOLOG 1 158 IPR044255 -
Hepe09g0316 160 MobiDBLite consensus disorder prediction 138 160 - -
Hepe09g0316 160 Gene3D Histone, subunit A 5 148 IPR009072 GO:0046982(InterPro)
Hepe09g0316 160 FunFam Negative cofactor 2 beta 6 147 - -
Hepe09g0316 160 SUPERFAMILY Histone-fold 12 145 IPR009072 GO:0046982(InterPro)
Hepe09g0316 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0316 K21751 - - csv:101214627 295.434
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0316 . 1 153 CCAAT-DR1 Transcription Factor Family AT5G08190 82.4 9.3e-64 240.0
Hepe09g0316 . 1 155 CCAAT-DR1 Transcription Factor Family AT5G23090 81.3 1.3e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56339 PF00808 CBFD_NFYB_HMF 2.90E-22 CL0012 Hepe TF