Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0326 ATGACTTGGAGGAGAGTGTTGAAGTCGGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTTAAGCTCGATCATTTTGTCTCCCACAGTTGGTGGGCTATATTTTTTCCGCTTTGGGTGTTTCATGTGGCTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACGCCTTTGCTTATAGCATTTGAATTACTTCTTTGTATATACCTCGAGAGCCTATCTGTTTATGGTTTTGCTGCTGTGAATTTGAAGATCGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATTTTAATAGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGACGATGAAAGCATGAGTGATGAGGCAGTATGGGAGACACTGCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTCTTTGCTGCTACAGTATTTACTCTACTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTGTTTATAAACTTTGGCATTGCCGAGTGCTTTGCCTTTCTCGTCTGTACAAAGTGGTCTAATCCTGCGATTCATAGAAATATTCAAACAAGAGAAAATTGTTCATCATCATCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTTATCCAGAGCAGGATCAGCATCAGGACAGAATGTGTGGCCTTCAAGACATTGGTGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAGTCCTACTCTGCATGTATTTAGAGGGAACGCCTGTGGGTGCGAAAGATATTCCACTTCCTGTCCTTTTCTCGCCCCTTTTTATATTGCAAGGTGCTGCTGTTATTTATGCTGCATCTAGATTGTTAGAGAAAGTTATACTTCTCTTAAGAGGTGGATCTGGCACAGCATTGTATTTCAGTTTTTCTACTAAGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAGGTAGTCGAGAGGAGCAGGCACGATTATACCAGGAGGGTGCCTCTGGGTACAATACTTTTAGTGGATATCCTCCCGAGATCGTGAAGAAGATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAGATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCGTGTAGGCATCGAATACTATGCAGTTCTTGCTCTGAGAAGTGTAAAAAGTGCCCAATATGTCGTGTCTCTATCGAAGAACGGTTACCGGTATATGATGTTTAG 1404 43.52 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWAIFFPLWVFHVAVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESLSVYGFAAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAVWETLPHFWVAISMVFFFAATVFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRENCSSSSVVRYLDWNSGLIVYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQVLLCMYLEGTPVGAKDIPLPVLFSPLFILQGAAVIYAASRLLEKVILLLRGGSGTALYFSFSTKAHACLEFFHHGSRLLGWWSIDEGSREEQARLYQEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRILCSSCSEKCKKCPICRVSIEERLPVYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2861426 2869395 + Hsped.09g03260.1 Hepe09g0326 579010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0326 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Hepe09g0326 467 SMART ring_2 420 454 IPR001841 -
Hepe09g0326 467 FunFam Kinesin-like protein KIN-7D, mitochondrial 397 465 - -
Hepe09g0326 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Hepe09g0326 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Hepe09g0326 467 SUPERFAMILY RING/U-box 411 462 - -
Hepe09g0326 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Hepe09g0326 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 465 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2731 Hepe-Chr2:75713266 Hepe09g0326 Hepe-Chr9:2861426 2.89e-225 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0326 - - - 0.0