Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0340 ATGCGTATAAGCTGTAATGGATGCCGTGTTCTTCGCAAAGGCTGCACTGAAACCTGCTCAATCAGACCCTGTCTTCAATGGATCAAAACCCCTCAATCACAATCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGCGCCGGCCTTGTTAACCTCATCAATGCCGGCCCCGACCATCTTCGCCCTGCGATTTTTAAATCTTTGCTATTCGAGGCGTGTGGTCGGATTGTGAATCCGATTTTCGGGTCCGCCGGATTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCCGTTCTGAAAGGCGAGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCATGTGGGCCCACCGTTGAAGGGCTGCGACATCCGCCATGTAGGTTCCGCCGCTTCCGATTCTGCGCTCCGGAAGATCAAGACGCGGCGGCGATTCAAGCGCTCTGCGGCTGCGGCGAAGCCGAAGGAGGAGCCAATGGTGGCGACCGAGTTCGGTTTAGATGACCCGACCCGGAATGTATCGGAGCCCCGGTGTTTGAATTTGGAGTTGGACAATGGGGGGAGCCATGAGTCAGAGCTGAGTCAGCAGCTGCCGGAGAAGGACTGCGGCGGCGAAGACGCCGAGTGCTTGTCGGTGGAGACTGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAGTTGGAGCTTAGCTTGTGGTTTGGGCACAGTCGGATGCTGACGTGA 744 58.33 MRISCNGCRVLRKGCTETCSIRPCLQWIKTPQSQSNATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGEPILPVSSETAASHVGPPLKGCDIRHVGSAASDSALRKIKTRRRFKRSAAAAKPKEEPMVATEFGLDDPTRNVSEPRCLNLELDNGGSHESELSQQLPEKDCGGEDAECLSVETVEASSVGQGGDVELELSLWFGHSRMLT 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2984055 2985182 - Hsped.09g03400.1 Hepe09g0340 579024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0340 247 MobiDBLite consensus disorder prediction 190 210 - -
Hepe09g0340 247 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - GO:0010468(PANTHER)
Hepe09g0340 247 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Hepe09g0340 247 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1305 Hepe-Chr4:68662327 Hepe09g0340 Hepe-Chr9:2984055 3.64e-49 dispersed
Hepe02g0980 Hepe-Chr2:11929986 Hepe09g0340 Hepe-Chr9:2984055 6.13e-85 transposed
Hepe01g1189 Hepe-Chr1:77054070 Hepe09g0340 Hepe-Chr9:2984055 5.97e-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56343 PF03195 LOB 6.50E-22 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0340 - - - 0.0