Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0348 ATGGCGGATTTCACTTCTGAATTGCAAACCTTCAAGCCTTCTTTCTCCTTCCCGGATTTAATGATGGATCCTAATTTGGAATTAATGGGTCCTAATTTAGATAACCCAGCTGGGAATTTCACTAATTTTTTGCCATTTTCTTCCAATGAGATATTCTTCCCTCCTCATCAAAACCCACAAGAATTTCCACAAAATTTGGGAGAAATTACTACGACCTTCCCAATTTCTCGTGAATTCCATCAGATCAAGAGAAAATCCATGGATGTTTCAGAAAGCTCCTCTGGAATTTCAACTCCACAAGTTTCTGAAACTGCCTTCAACAACCCCAAAAATAGCTCTGGAAAAGGGAAGAGATTGAAAAGCATAGAGAAAGAAGAAGAGAAATCAACCAGAGAAGTGGTTCATGTCAGAGCTAGAAGAGGCCAAGCTACTGATAGCCATAGTTTAGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAGTCATGTTGGATGAGATAATTAATTATGTCCAATCTTTACAGAATCAAGTGGAGTTCCTATCCATGAAACTTGCTGCAGCTAGTTCTTTTTATGACTTTAACTCGGAGTCAGATGCGATATCAAAATTACAGAGGGCAAAGGCAAATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA 762 39.63 MADFTSELQTFKPSFSFPDLMMDPNLELMGPNLDNPAGNFTNFLPFSSNEIFFPPHQNPQEFPQNLGEITTTFPISREFHQIKRKSMDVSESSSGISTPQVSETAFNNPKNSSGKGKRLKSIEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSESDAISKLQRAKANEAKELERLMREGYGGVACFHSTLPL 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3058840 3060212 - Hsped.09g03480.1 Hepe09g0348 579032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0348 253 Coils Coil 219 239 - -
Hepe09g0348 253 CDD bHLH_AtBPE_like 132 217 - -
Hepe09g0348 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 192 IPR011598 GO:0046983(InterPro)
Hepe09g0348 253 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983(InterPro)
Hepe09g0348 253 FunFam transcription factor BEE 3-like 139 210 - -
Hepe09g0348 253 MobiDBLite consensus disorder prediction 116 148 - -
Hepe09g0348 253 MobiDBLite consensus disorder prediction 88 115 - -
Hepe09g0348 253 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 92 228 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe09g0348 253 Gene3D - 138 210 IPR036638 GO:0046983(InterPro)
Hepe09g0348 253 SMART finulus 148 198 IPR011598 GO:0046983(InterPro)
Hepe09g0348 253 MobiDBLite consensus disorder prediction 86 148 - -
Hepe09g0348 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 210 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0985 Hepe-Chr2:12005111 Hepe09g0348 Hepe-Chr9:3058840 8.31e-10 dispersed
Hepe05g1121 Hepe-Chr5:55294306 Hepe09g0348 Hepe-Chr9:3058840 8.11e-32 dispersed
Hepe09g0348 Hepe-Chr9:3058840 Hepe09g1288 Hepe-Chr9:17812091 3.97e-48 dispersed
Hepe02g2699 Hepe-Chr2:74908893 Hepe09g0348 Hepe-Chr9:3058840 5.15e-49 wgd
Hepe07g2392 Hepe-Chr7:68266336 Hepe09g0348 Hepe-Chr9:3058840 3.67e-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56345 PF00010 HLH 4.20E-05 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0348 - - - 0.0