Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0369 ATGCCTTACTCAACCATCTTCAACGCCCATATCAGGGCCACCATGTCCCTCTCTCTCAGACCCACCACTTCCCTTTCTCCATTTCACAAACCTTCAACGCGCTTCCCACACCTTTTCTTCAGGAACCTTTCCATGGGGTTTGTCAATAACTTGCACCAGTCCCGTCTGGGTTCCGTCTCTGCTGTTCGTTGTACGACCCAATCCAAGTGGGTTCAGGTTTCTCCGACAGACAAACACCACGACCGTGCCTCCAGGGGTTTCCGGCACAGGAATCTCGCTTTCCCTCTTTGGCAGCATCAGCCCTGCTCCAATTATGGTCGCTTTGCTTATGAGGATGTCTCCAGTGATGACTCTGATGTCGAATTTGGGTCTACGCCGGGCCAAATGAGTTCATCAACCCTTGAGAATATAGACGAGTGGAGATGGAAATTAACCATGCTTCTACGCAACAATGAAGATCAAGAAGTAGTGTCAAGGGACAAAAAGGATAGACGTGATTTTGACCAACTTTCAGCATTGGCAACCAGAATGGGTTTGCATAGCCGTCAATATTCAAAAGTCATTGTATTTAGTAAAGACCCTCTGCCGAATTACAGGCCGGATCTAGATGATCGGCGACCGCAAAGGGAGGTTGTCTTACCTTTTGGGGTCCAAAGGGAAGTTGAAGACCATCTAAGATTGTACCAATCTCACAAGTCTGTGACAAGAGGAGGTTTTTCAAATAGTTACTTGCCAAAATCTGGCATTGCTGAAAACCGTGCTAACAGTAATGGGCTGTTTGAGCACCAGAAGCCTTCGACAACACAAAGTGTTGTCATGGAGAAAATTCTTCTCCGCAAAAGTTTGCAACTGAGGAATCAACAGCAAGATTGGCAGGAATCTCCTGAGGGCCAAAAAATGATGGAATTTCGCAAAAGTCTCCCTGCATTCAAAGAGAGGGAAACATTGTTAAAAACCATTTCAGAAAATCAGGTAGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAAACCACACAGCTTCCTCAGTATATATTAGAATCTGAGTTTGAAGCTGCTCGTGGAGCTTCTTGTAGTATTATCTGTACTCAGCCTAGACGTATTTCTGCCATGGCTGTTTCTGAAAGAGTTGCTGCAGAACGTGGAGAGAAACTAGGAGAGTCTGTTGGTTATAAAGTTCGTCTGGAGGGTATAAAAGGGAGGGACACTCGTCTTCTCTTTTGCACCACTGGTGTACTATTGAGAAGATTGCTCGTTGACAGAAATTTGAAAGGTGTAACTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTTGTAATTGTCCTGAAAGATCTTCTCCCTCGACGGCCAGATTTGAGGTTGATCTTAATGAGCGCAACTCTAAATGCAGAACTTTTTTCTTCTTATTTTGGTGGTGCTCCAACAATGCATATTCCTGGTTTTACATACCCAGTTCGTGCACACTTTCTGGAGAATATTCTAGAGATGACTAGCTATCGGTTGACTTCATATAATCAAATTGATGATTATGGTCAAGAAAAGGCATGGAAAATGCAAAAACAAGCTCAAACTCTAAAGAAAAGGAAGACCCAGATTGCTTCATCTGTTGAGGATGCATTTGAGGCTGCTAACTTTTCAGCATACAGTCCTCGGACTCAGGAGTCTCTATCCTGTTGGAATCCTGACTCAATTGGTTTCAATCTCATTGAGCATGTTCTCTCTTACATTGTCAAGAGGGAGAGGCCAGGTGCTATATTAGTTTTTATGACCGGTTGGGATGATATAAACTCTTTAAAGGACCAGCTCCAGTCTCATCCTTTATTCGGGGATCCTAGCAAAGTCTTGCTCCTTGCATGTCATGGTTCGATGGCCAGCGCTGAGCAGAAATTGATATTTGATAAACCTGAAGATGGAGTTAGGAAAATAGTCCTAGCGACGAACATGGCAGAGACTAGTATCACCATCAATGACGTGGTTTTTGTTGTTGATTGTGGAAAAGCAAAGGAGACATCCTATGATGCACTTAATAACACTCCTTGTTTGCTTCCATCCTGGGTCTCTAAGGCTGCTGCGCGACAAAGAAGAGGTAGGGCTGGTCGTGTTCAATCTGGCGAGTGTTACCATCTCTATCCCAGATGCGTGCATGATGCTTTTGCTGATTATCAACTGCCAGAACTTTTAAGGACCCCATTGCAGTCTCTGTGTTTGCAAATCAAGAGTCTGCAACTTGGAAGTATATCAGAGTTCCTATCAAATGCATTGCAGCCGCCAGAGCCTTTATCAGTTCAAAATGCCATAGACTATTTGAAGACAATTGGAGCTCTAGATGAGAAAGAAAATCTGACAGTTCTTGGGCAACACTTGTCAGTTCTTCCAGTTGAGCCTAAACTGGGAAAAATGCTTATATTAGGAGCTATTTTCAACTGTCTTGATCCGATTATGACTATTGTTGCTGGTCTTAGTGTCAGAGATCCTTTCCTAATGCCAGCTGATAAGAAGGATTTAGCCGAATCAGCAAAAGCACAGTTTGCTGCGCGGGACTGCAGTGATCATCTTGCCTTAGTTCGAGCTTATGATGGTTGGAGAGATGCTGAAAGAAAGCAATCCGGTTATGAGTACTGTTGGAGAAACTTTCTCTCCCTGCAAACTCTCAGAGCCATCGACTCTCTGAGGAAGCAGTTCTTCTTTTTGCTGAAGGACACTGGTCTAGTTGAGTTTGATGCAGAAAAAGGCAACATCTTGAACCACGATGGGCATTTAATCCGTGCAGTCACATGTGCGGGTTTATTTCCCGGAATTTGCTCTGTTGTGAACAAAGATAAATCAGTAGCTTTGAAAACAATGGAAGATGGCCAGGTTATGCTATACTCGAACTCAGTTAATGCTGGCTTTCCAAAAATTCCCTACCCATGGCTGGTATTTAATGAAAAGGTGAAAGTCAATTCAGTCTTCCTTCGGGATTCTACTGGTGTTTCGGACTCTATCCTTCTTTTATTTGGAGGAAATGTTTCGAGAGGAGGACTTGATGGTCACCTCAAAATGATGGATGGTTATTTGGAGTTTTTCATGAAACCTGCATTGGCCGAGACTTATTTGAGCCTTAAAAGCGAGCTTGATGAGCTTGTTCATCAAAAACTTTTGAATCCGAAGTTAGATATGCAGCCACACAATGAACTACTATCAGCGGTAAGGTTGTTGGTGTCAGAGGATCGCTGTGAGGGTAGGTTTGTCTTTGGTCGCCATGTGCCAGTACCATCAAAAAAGGCGATGGCCGACGGTCTACCTCGACAGAAAAAGGGTGATGGAGTTGGGGGTGATAATTCGAAGAGTCAGCTTCAGACCCTACTTCTGAGAGCTGGACATGACGCACCAACTTACAAAACTAAGCAATTAAAAAACAATGAGTTCCGCGCCACTGTTCTTTTCAACGGATTGAACTTTGTGGGCCAACCATGTGGCAGCAAGAAACTTGCAGAAAAAGATGCAGCTGCTGAGGCTCTGCTATGGCTACAGGGCGAGACACGTTCATCTGCCCAAGCTATTGATCATGCTTCCATACTTCTGAAAAAGAGCAAAAAGAACAATGATAGAACCTCATTTCATAGTGCCAAATGGAGTTGA 3636 43.7 MPYSTIFNAHIRATMSLSLRPTTSLSPFHKPSTRFPHLFFRNLSMGFVNNLHQSRLGSVSAVRCTTQSKWVQVSPTDKHHDRASRGFRHRNLAFPLWQHQPCSNYGRFAYEDVSSDDSDVEFGSTPGQMSSSTLENIDEWRWKLTMLLRNNEDQEVVSRDKKDRRDFDQLSALATRMGLHSRQYSKVIVFSKDPLPNYRPDLDDRRPQREVVLPFGVQREVEDHLRLYQSHKSVTRGGFSNSYLPKSGIAENRANSNGLFEHQKPSTTQSVVMEKILLRKSLQLRNQQQDWQESPEGQKMMEFRKSLPAFKERETLLKTISENQVVVVSGETGCGKTTQLPQYILESEFEAARGASCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLENILEMTSYRLTSYNQIDDYGQEKAWKMQKQAQTLKKRKTQIASSVEDAFEAANFSAYSPRTQESLSCWNPDSIGFNLIEHVLSYIVKRERPGAILVFMTGWDDINSLKDQLQSHPLFGDPSKVLLLACHGSMASAEQKLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWVSKAAARQRRGRAGRVQSGECYHLYPRCVHDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKTIGALDEKENLTVLGQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPADKKDLAESAKAQFAARDCSDHLALVRAYDGWRDAERKQSGYEYCWRNFLSLQTLRAIDSLRKQFFFLLKDTGLVEFDAEKGNILNHDGHLIRAVTCAGLFPGICSVVNKDKSVALKTMEDGQVMLYSNSVNAGFPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSILLLFGGNVSRGGLDGHLKMMDGYLEFFMKPALAETYLSLKSELDELVHQKLLNPKLDMQPHNELLSAVRLLVSEDRCEGRFVFGRHVPVPSKKAMADGLPRQKKGDGVGGDNSKSQLQTLLLRAGHDAPTYKTKQLKNNEFRATVLFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETRSSAQAIDHASILLKKSKKNNDRTSFHSAKWS 1211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3252942 3261796 + Hsped.09g03690.1 Hepe09g0369 579053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0369 1211 SMART ultradead3 305 498 IPR014001 -
Hepe09g0369 1211 CDD DEXHc_RHA-like 323 483 - -
Hepe09g0369 1211 FunFam DExH-box ATP-dependent RNA helicase DExH3 569 725 - -
Hepe09g0369 1211 SUPERFAMILY dsRNA-binding domain-like 1111 1183 - -
Hepe09g0369 1211 Gene3D - 565 725 IPR027417 -
Hepe09g0369 1211 Pfam Helicase associated domain (HA2), winged-helix 770 798 IPR048333 -
Hepe09g0369 1211 CDD SF2_C_RHA 553 715 - -
Hepe09g0369 1211 Pfam DEAD/DEAH box helicase 316 469 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Hepe09g0369 1211 PANTHER ATP-DEPENDENT RNA HELICASE 270 1100 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005634(PANTHER)
Hepe09g0369 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 876 IPR027417 -
Hepe09g0369 1211 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 573 747 IPR001650 -
Hepe09g0369 1211 Gene3D - 259 485 IPR027417 -
Hepe09g0369 1211 Gene3D - 749 853 - -
Hepe09g0369 1211 Gene3D - 1101 1181 - -
Hepe09g0369 1211 Pfam Double-stranded RNA binding motif 1114 1175 IPR014720 -
Hepe09g0369 1211 MobiDBLite consensus disorder prediction 1093 1112 - -
Hepe09g0369 1211 SMART DRBM_3 1113 1176 IPR014720 -
Hepe09g0369 1211 FunFam Putative ATP-dependent RNA helicase DHX36 749 853 - -
Hepe09g0369 1211 FunFam DExH-box ATP-dependent RNA helicase DExH3 260 485 - -
Hepe09g0369 1211 Pfam Helicase conserved C-terminal domain 576 706 IPR001650 -
Hepe09g0369 1211 Pfam Helicase associated domain (HA2), ratchet-like 799 859 - -
Hepe09g0369 1211 SMART helicmild6 601 707 IPR001650 -
Hepe09g0369 1211 SMART ha2_5 769 860 IPR007502 -
Hepe09g0369 1211 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 317 484 IPR014001 -
Hepe09g0369 1211 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 926 1008 IPR011709 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0369 K14442 - - csv:101211075 2057.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1126 Hepe-Chr1:76420454 Hepe09g0369 Hepe-Chr9:3252942 0.0 dispersed
Hepe07g0521 Hepe-Chr7:5504185 Hepe09g0369 Hepe-Chr9:3252942 3.21e-165 dispersed
Hepe07g0900 Hepe-Chr7:11630221 Hepe09g0369 Hepe-Chr9:3252942 1.43e-142 dispersed
Hepe07g1213 Hepe-Chr7:29754299 Hepe09g0369 Hepe-Chr9:3252942 1.69e-75 dispersed
Hepe09g0369 Hepe-Chr9:3252942 Hepe09g1683 Hepe-Chr9:50521928 5.75e-87 dispersed
Hepe05g0447 Hepe-Chr5:5820337 Hepe09g0369 Hepe-Chr9:3252942 1.49e-287 transposed
Hepe01g1156 Hepe-Chr1:76663946 Hepe09g0369 Hepe-Chr9:3252942 0.0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70