Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0375 ATGTCTCTCCGCAGCCACCACGACGGCGGTGACGAGGACCTTTCCTCCGGCGAGGAAGACGATGAAGACGATGTGGTTGATGAGGACATGGAAGCCCTCCGTCGAGCCTGTATGCTTGCTGGAGTTAATCCTCAGGAGTACATGAATCCTCCGTTGTCGTCCCCTACCGCCGGAGATGATTCTGATGATGTTGATGATCTCGAACTTGTTCAGAATATTCGGAATCGGTTCTCGATTCCGGCTGATGAGCAGCCTTTGAGTACTCTCCCACCCGTGTCCCCGGACGAGGAGGAAGACGATTTCGAGACGCTTCGTAGGATTCAGCAGCGCTTTTCCGCGTATGATGGTGATACTTTGAGCAATAAACCTGACCAGTCTTGTGACTTCGATGGGCCTCTGGATATGGATTCTAACAACACAGGTGTTGAGAGACAGACGTCTGCAGAAAGGTCACCTATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGTCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCACCTTGAAGCTAGAATCGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTTATGCAGAAGAAAAACAAGTTGTGCACTGTCTCAGATGATAGATCCTCGAGTCCAGTTAATGTCAGCTGGAAAACCACAGGTTACGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTAACAAAGTTTTCACCTTCTGTAGATCGAAAAAGATGGTCCAATGTAGAGAGTGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAAGAGACGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGCCTACAAGGATTTTCAGCAGATTCAGATGATCTTGATAACATTCTTGCATCAATAAAAGACCTAGACATTACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAGTTGGCTTCCATGTATCTTCGAGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGAAATCCATGGACTACAAGTGAAGATAAGAATATTTTGTTTAATATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAGAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATTTTTGGTGTGGGAAATTGGCAAGCAGTAGCTTCTACTTTGGAAGGACGAACTGGTACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTCCAATTGTTTAGATCCTTCCTTGAGAAGATGTAAATGGACAGAAGAGGAGGATATAAGGCTAGATATAGCTATTCAGGAGCATGGATATAGCTGGGCTAAGGTAGCTGCTTGTGTGCCGTCACGTACAGATAATGACTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTTGTCCTACTGACTTTCGACCTATACCAAATACAGATTTATTATGTAATACTGATGATCCAAAACCTGCCCCGAAAGGAAATGTGAAGATGAGAAGGATGCCAGTGACAAGGAATGAAAAGAGTGCTACTGGTAATGATCCAAAGAAGAGGAACTCAAATAACCAGAGGAATCAAGCTGATGCAACTGCTCAGGTGGGTATTGCAAATGATGTGTCTTCGGTCCCTGAGAAGGTTAAATCTAGAAAGCCTCAAAGAAAACGAAATAGACATGGAGCTTATACCGCTAAGATGAAAGGGGTTCTGGAGCACTGTTCGAACAATGAGAGCCTCGAGGTGCAGCTGAATAGTAAGGAATCAGAGAGGACCAACAGTGACTGCACCGAGACCGTTGATGAGAATGGTATGGAGGTATGTGAGAACAAAGTTGCAGAGAAGCTTTCTATAAGGGATGTGTGCTTTTCAGAACAAGAAGATATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGACGGGTATAATCCTTCTATTCTTCCAGATACAGCATTGCTGGCTATTACTAGTGGGGACGATATTATAGAAAGGAAGGGGGAGAGTGTTGCAGACGAAGATCTGGATGACAGTAACAGTTTCTCGTTACCGCCCAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTCAACAGCTATTCTGTTGGTGAAATTACAGATAAAGACGACAGGATTTGCAAGCCCCAAGGCAGAAGGAAAAGAAACTGTAAAACATCAAATAAGAGCCAGGATTCATTGGTTTCTTGTCAACAAGTGGAGCTGGAGAGGCGGACGAAGCTAGAGCTTTGTCGTCTTAATCAATCAAAGAAGAGAAAACATAACAGTACGAATACGAGTCCATTGGGAAGATTGGAGGCAGTTGAAGAGGTTGATGACTGCACTCTCTTAAGCTTTTTGCAAAAAAGATCGAAGAGGACGCCAACAACAACCACACATGCCAAGAAAGTTGATGGTAGTTCTAGTAGTACTCCCCTAGAAGTTGATAATGACGATAATGATCCTACCATTGCTTCGCTTCTCAAGAATAAATTGAAGAGAAAAAAGCATCAAGTGCCAAAAGGATAA 2982 43.19 MSLRSHHDGGDEDLSSGEEDDEDDVVDEDMEALRRACMLAGVNPQEYMNPPLSSPTAGDDSDDVDDLELVQNIRNRFSIPADEQPLSTLPPVSPDEEEDDFETLRRIQQRFSAYDGDTLSNKPDQSCDFDGPLDMDSNNTGVERQTSAERSPMLAFEKGSLPKAALSFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGLCRRKTSCALSQMIDPRVQLMSAGKPQVTDSSKKDKRLSAMYYGPAENSHVACYRMALTKFSPSVDRKRWSNVESENLGKGIRQQFQETVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSEDKNILFNIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTRDEDDKLRSAVAIFGVGNWQAVASTLEGRTGTQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWSNCLDPSLRRCKWTEEEDIRLDIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALCPTDFRPIPNTDLLCNTDDPKPAPKGNVKMRRMPVTRNEKSATGNDPKKRNSNNQRNQADATAQVGIANDVSSVPEKVKSRKPQRKRNRHGAYTAKMKGVLEHCSNNESLEVQLNSKESERTNSDCTETVDENGMEVCENKVAEKLSIRDVCFSEQEDIQNSTGSSGVSVLSEMTNDMDGYNPSILPDTALLAITSGDDIIERKGESVADEDLDDSNSFSLPPSCLELRTTDSEGVNSYSVGEITDKDDRICKPQGRRKRNCKTSNKSQDSLVSCQQVELERRTKLELCRLNQSKKRKHNSTNTSPLGRLEAVEEVDDCTLLSFLQKRSKRTPTTTTHAKKVDGSSSSTPLEVDNDDNDPTIASLLKNKLKRKKHQVPKG 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3332928 3342420 - Hsped.09g03750.1 Hepe09g0375 579059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0375 993 MobiDBLite consensus disorder prediction 1 63 - -
Hepe09g0375 993 Gene3D - 430 480 - -
Hepe09g0375 993 SUPERFAMILY Homeodomain-like 481 577 IPR009057 -
Hepe09g0375 993 SUPERFAMILY Homeodomain-like 410 480 IPR009057 -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 273 372 IPR001005 -
Hepe09g0375 993 CDD SANT 538 581 IPR001005 -
Hepe09g0375 993 CDD SANT 433 477 IPR001005 -
Hepe09g0375 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 531 585 IPR017930 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 14 28 - -
Hepe09g0375 993 Gene3D - 538 584 - -
Hepe09g0375 993 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 16 988 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Hepe09g0375 993 CDD SANT 380 425 IPR001005 -
Hepe09g0375 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 483 530 IPR017930 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 645 659 - -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 426 477 IPR001005 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 660 682 - -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 624 703 - -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 942 974 - -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 373 425 IPR001005 -
Hepe09g0375 993 Gene3D - 481 535 - -
Hepe09g0375 993 Pfam Myb-like DNA-binding domain 484 530 IPR001005 -
Hepe09g0375 993 Pfam Myb-like DNA-binding domain 431 475 IPR001005 -
Hepe09g0375 993 Pfam Myb-like DNA-binding domain 378 423 IPR001005 -
Hepe09g0375 993 Pfam Myb-like DNA-binding domain 536 580 IPR001005 -
Hepe09g0375 993 Gene3D - 375 425 - -
Hepe09g0375 993 CDD SANT 487 528 IPR001005 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 942 968 - -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 531 581 IPR001005 -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 479 530 IPR001005 -
Hepe09g0375 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 426 481 IPR017930 -
Hepe09g0375 993 SMART sant 430 479 IPR001005 -
Hepe09g0375 993 SMART sant 535 583 IPR001005 -
Hepe09g0375 993 SMART sant 483 532 IPR001005 -
Hepe09g0375 993 SMART sant 277 374 IPR001005 -
Hepe09g0375 993 SMART sant 377 427 IPR001005 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 77 101 - -
Hepe09g0375 993 SUPERFAMILY Homeodomain-like 354 422 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0375 K09422 - - csv:101216287 1455.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0375 Hepe-Chr9:3332928 Hepe10g1313 Hepe-Chr10:48981852 6.06e-15 dispersed
Hepe09g0375 Hepe-Chr9:3332928 Hepe09g0205 Hepe-Chr9:1708330 1.53e-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g1458 . 1 775 MYB-Related Transcription Factor Family AT1G09770 74.2 1.1e-309 1059.3
Hepe09g0375 . 160 626 MYB-Related Transcription Factor Family AT3G18100 55.8 8.5e-151 531.2
Hepe09g0375 . 160 626 MYB-Related Transcription Factor Family AT3G18100 55.8 8.5e-151 531.2
Hepe09g1458 . 1 775 MYB-Related Transcription Factor Family AT1G09770 74.2 1.1e-309 1059.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56347 PF00249 Myb_DNA-binding 1.60E-08 CL0123 Hepe TF