Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0375 ATGTCTCTCCGCAGCCACCACGACGGCGGTGACGAGGACCTTTCCTCCGGCGAGGAAGACGATGAAGACGATGTGGTTGATGAGGACATGGAAGCCCTCCGTCGAGCCTGTATGCTTGCTGGAGTTAATCCTCAGGAGTACATGAATCCTCCGTTGTCGTCCCCTACCGCCGGAGATGATTCTGATGATGTTGATGATCTCGAACTTGTTCAGAATATTCGGAATCGGTTCTCGATTCCGGCTGATGAGCAGCCTTTGAGTACTCTCCCACCCGTGTCCCCGGACGAGGAGGAAGACGATTTCGAGACGCTTCGTAGGATTCAGCAGCGCTTTTCCGCGTATGATGGTGATACTTTGAGCAATAAACCTGACCAGTCTTGTGACTTCGATGGGCCTCTGGATATGGATTCTAACAACACAGGTGTTGAGAGACAGACGTCTGCAGAAAGGTCACCTATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGTCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCACCTTGAAGCTAGAATCGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTTATGCAGAAGAAAAACAAGTTGTGCACTGTCTCAGATGATAGATCCTCGAGTCCAGTTAATGTCAGCTGGAAAACCACAGGTTACGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTAACAAAGTTTTCACCTTCTGTAGATCGAAAAAGATGGTCCAATGTAGAGAGTGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAAGAGACGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGCCTACAAGGATTTTCAGCAGATTCAGATGATCTTGATAACATTCTTGCATCAATAAAAGACCTAGACATTACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAGTTGGCTTCCATGTATCTTCGAGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGAAATCCATGGACTACAAGTGAAGATAAGAATATTTTGTTTAATATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAGAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATTTTTGGTGTGGGAAATTGGCAAGCAGTAGCTTCTACTTTGGAAGGACGAACTGGTACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTCCAATTGTTTAGATCCTTCCTTGAGAAGATGTAAATGGACAGAAGAGGAGGATATAAGGCTAGATATAGCTATTCAGGAGCATGGATATAGCTGGGCTAAGGTAGCTGCTTGTGTGCCGTCACGTACAGATAATGACTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTTGTCCTACTGACTTTCGACCTATACCAAATACAGATTTATTATGTAATACTGATGATCCAAAACCTGCCCCGAAAGGAAATGTGAAGATGAGAAGGATGCCAGTGACAAGGAATGAAAAGAGTGCTACTGGTAATGATCCAAAGAAGAGGAACTCAAATAACCAGAGGAATCAAGCTGATGCAACTGCTCAGGTGGGTATTGCAAATGATGTGTCTTCGGTCCCTGAGAAGGTTAAATCTAGAAAGCCTCAAAGAAAACGAAATAGACATGGAGCTTATACCGCTAAGATGAAAGGGGTTCTGGAGCACTGTTCGAACAATGAGAGCCTCGAGGTGCAGCTGAATAGTAAGGAATCAGAGAGGACCAACAGTGACTGCACCGAGACCGTTGATGAGAATGGTATGGAGGTATGTGAGAACAAAGTTGCAGAGAAGCTTTCTATAAGGGATGTGTGCTTTTCAGAACAAGAAGATATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGACGGGTATAATCCTTCTATTCTTCCAGATACAGCATTGCTGGCTATTACTAGTGGGGACGATATTATAGAAAGGAAGGGGGAGAGTGTTGCAGACGAAGATCTGGATGACAGTAACAGTTTCTCGTTACCGCCCAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTCAACAGCTATTCTGTTGGTGAAATTACAGATAAAGACGACAGGATTTGCAAGCCCCAAGGCAGAAGGAAAAGAAACTGTAAAACATCAAATAAGAGCCAGGATTCATTGGTTTCTTGTCAACAAGTGGAGCTGGAGAGGCGGACGAAGCTAGAGCTTTGTCGTCTTAATCAATCAAAGAAGAGAAAACATAACAGTACGAATACGAGTCCATTGGGAAGATTGGAGGCAGTTGAAGAGGTTGATGACTGCACTCTCTTAAGCTTTTTGCAAAAAAGATCGAAGAGGACGCCAACAACAACCACACATGCCAAGAAAGTTGATGGTAGTTCTAGTAGTACTCCCCTAGAAGTTGATAATGACGATAATGATCCTACCATTGCTTCGCTTCTCAAGAATAAATTGAAGAGAAAAAAGCATCAAGTGCCAAAAGGATAA 2982 43.19 MSLRSHHDGGDEDLSSGEEDDEDDVVDEDMEALRRACMLAGVNPQEYMNPPLSSPTAGDDSDDVDDLELVQNIRNRFSIPADEQPLSTLPPVSPDEEEDDFETLRRIQQRFSAYDGDTLSNKPDQSCDFDGPLDMDSNNTGVERQTSAERSPMLAFEKGSLPKAALSFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGLCRRKTSCALSQMIDPRVQLMSAGKPQVTDSSKKDKRLSAMYYGPAENSHVACYRMALTKFSPSVDRKRWSNVESENLGKGIRQQFQETVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSEDKNILFNIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTRDEDDKLRSAVAIFGVGNWQAVASTLEGRTGTQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWSNCLDPSLRRCKWTEEEDIRLDIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALCPTDFRPIPNTDLLCNTDDPKPAPKGNVKMRRMPVTRNEKSATGNDPKKRNSNNQRNQADATAQVGIANDVSSVPEKVKSRKPQRKRNRHGAYTAKMKGVLEHCSNNESLEVQLNSKESERTNSDCTETVDENGMEVCENKVAEKLSIRDVCFSEQEDIQNSTGSSGVSVLSEMTNDMDGYNPSILPDTALLAITSGDDIIERKGESVADEDLDDSNSFSLPPSCLELRTTDSEGVNSYSVGEITDKDDRICKPQGRRKRNCKTSNKSQDSLVSCQQVELERRTKLELCRLNQSKKRKHNSTNTSPLGRLEAVEEVDDCTLLSFLQKRSKRTPTTTTHAKKVDGSSSSTPLEVDNDDNDPTIASLLKNKLKRKKHQVPKG 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3332928 3342420 - Hsped.09g03750.1 Hepe09g0375 579059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0375 993 MobiDBLite consensus disorder prediction 1 63 - -
Hepe09g0375 993 Gene3D - 430 480 - -
Hepe09g0375 993 SUPERFAMILY Homeodomain-like 481 577 IPR009057 -
Hepe09g0375 993 SUPERFAMILY Homeodomain-like 410 480 IPR009057 -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 273 372 IPR001005 -
Hepe09g0375 993 CDD SANT 538 581 IPR001005 -
Hepe09g0375 993 CDD SANT 433 477 IPR001005 -
Hepe09g0375 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 531 585 IPR017930 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 14 28 - -
Hepe09g0375 993 Gene3D - 538 584 - -
Hepe09g0375 993 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 16 988 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Hepe09g0375 993 CDD SANT 380 425 IPR001005 -
Hepe09g0375 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 483 530 IPR017930 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 645 659 - -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 426 477 IPR001005 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 660 682 - -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 624 703 - -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 942 974 - -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 373 425 IPR001005 -
Hepe09g0375 993 Gene3D - 481 535 - -
Hepe09g0375 993 Pfam Myb-like DNA-binding domain 484 530 IPR001005 -
Hepe09g0375 993 Pfam Myb-like DNA-binding domain 431 475 IPR001005 -
Hepe09g0375 993 Pfam Myb-like DNA-binding domain 378 423 IPR001005 -
Hepe09g0375 993 Pfam Myb-like DNA-binding domain 536 580 IPR001005 -
Hepe09g0375 993 Gene3D - 375 425 - -
Hepe09g0375 993 CDD SANT 487 528 IPR001005 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 942 968 - -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 531 581 IPR001005 -
Hepe09g0375 993 ProSiteProfiles Myb-like domain profile. 479 530 IPR001005 -
Hepe09g0375 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 426 481 IPR017930 -
Hepe09g0375 993 SMART sant 430 479 IPR001005 -
Hepe09g0375 993 SMART sant 535 583 IPR001005 -
Hepe09g0375 993 SMART sant 483 532 IPR001005 -
Hepe09g0375 993 SMART sant 277 374 IPR001005 -
Hepe09g0375 993 SMART sant 377 427 IPR001005 -
Hepe09g0375 993 MobiDBLite consensus disorder prediction 77 101 - -
Hepe09g0375 993 SUPERFAMILY Homeodomain-like 354 422 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0375 Hepe-Chr9:3332928 Hepe10g1313 Hepe-Chr10:48981852 6.06e-15 dispersed
Hepe09g0375 Hepe-Chr9:3332928 Hepe09g0205 Hepe-Chr9:1708330 1.53e-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56347 PF00249 Myb_DNA-binding 1.60E-08 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0375 K09422 - csv:101216287 1455.27