Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0388 ATGAATATTTGGGATTCCAAGTCTCACTCAAGACATTCGTACATAATGGATCCGCCTAAGGTATCACGTGGATCACACACACAACTAATCTCTAACAAGACTTCCAAGGAGAAGGCTAAGTCGAGGAGGTACGAACGAAGCAGACAAGGCAAACAATCTACCGAGCTCAGTCCTACCCAAGTCGAGAGTTTCTTTAGCATGTGGACTTTGGGATATGATGATGATGGTGGAGAATTTTGCTCCTCTGAGCCCTTTCATGGCGGTCGCAAGCTTCGACCTCTCGTACCTCGGCCATTGCCTTCGCTTCGTGTTAATGGCACCAACTTCTCTTCCCAATATTACCATCTGGCTAATTTTTTGAATGAGGAAAGCAAAAGAGAGTTGTTGTTGAAAAATGAAAATAGTACATCTTGTCCACCAGTAGTAGTGAGCTCATCAAGATGGAATCCGACGGTGGAGCAGTTGAGAATTCTGGAGGAACTTTACCGGCGGGGGACTCGAACGCCGTCCGCCGACCAAATCCAACACATCACCGCCCAGCTCCGCCGCTACGGCAAAATAGAAGGCAAAAACGTCTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGACGTCAAACTGCCGCTGAAGAAACCAAATATTCAGGGGCAGAAAAAAGGTACGAAATTGAACAGAGAAAGACGAATTGCAGCTGGCTAAGCCCAACAACACCACCCTCTAAAATCTGCACTGCCTCACTTTCACAGGAATATGCAAAATCTGAGAGAAGAAGAAAAGTAGTAGAATTGGAATTAGAAGAAGAACAAGAAAGAAGAGATGGGACATGGAACAATAGCACAGTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACGATGTCGTCATTGACGACGACGACTACGACAACGGTAGCGTGGAATATTCTGAAACGATGACGCTTCAGCTGTTTCCTCTCCGCAGTGCTAAGTTATGCAAATACGACGGAGAGAGAGAGGGACGACTAGATGATCGACTGGAGATCGTGTCGGATTCAGACATGATCAAAAGCTCCACATTTTCTCCCAGTTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAGAAACTGA 1134 45.41 MNIWDSKSHSRHSYIMDPPKVSRGSHTQLISNKTSKEKAKSRRYERSRQGKQSTELSPTQVESFFSMWTLGYDDDGGEFCSSEPFHGGRKLRPLVPRPLPSLRVNGTNFSSQYYHLANFLNEESKRELLLKNENSTSCPPVVVSSSRWNPTVEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEETKYSGAEKRYEIEQRKTNCSWLSPTTPPSKICTASLSQEYAKSERRRKVVELELEEEQERRDGTWNNSTVNCQLINPTRKTQHLNDVVIDDDDYDNGSVEYSETMTLQLFPLRSAKLCKYDGEREGRLDDRLEIVSDSDMIKSSTFSPSCSFQFFEFLPLRN 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3470547 3476525 + Hsped.09g03880.1 Hepe09g0388 579072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0388 377 Coils Coil 255 275 - -
Hepe09g0388 377 Gene3D - 145 213 - -
Hepe09g0388 377 MobiDBLite consensus disorder prediction 1 58 - -
Hepe09g0388 377 FunFam WUSCHEL-related homeobox 4 145 212 - -
Hepe09g0388 377 SMART HOX_1 143 210 IPR001356 GO:0003677(InterPro)
Hepe09g0388 377 ProSiteProfiles 'Homeobox' domain profile. 151 206 IPR001356 GO:0003677(InterPro)
Hepe09g0388 377 Pfam Homeodomain 146 205 IPR001356 GO:0003677(InterPro)
Hepe09g0388 377 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 140 342 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Hepe09g0388 377 SUPERFAMILY Homeodomain-like 145 210 IPR009057 -
Hepe09g0388 377 CDD homeodomain 147 207 IPR001356 GO:0003677(InterPro)
Hepe09g0388 377 MobiDBLite consensus disorder prediction 33 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0388 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0838 Hepe-Chr8:7585166 Hepe09g0388 Hepe-Chr9:3470547 7.17e-26 dispersed
Hepe09g0388 Hepe-Chr9:3470547 Hepe10g1216 Hepe-Chr10:47217185 1.67e-25 dispersed
Hepe04g1587 Hepe-Chr4:71344214 Hepe09g0388 Hepe-Chr9:3470547 5.91e-27 transposed
Hepe02g3328 Hepe-Chr2:82873236 Hepe09g0388 Hepe-Chr9:3470547 5.15e-25 transposed
Hepe07g2356 Hepe-Chr7:67936044 Hepe09g0388 Hepe-Chr9:3470547 2.76e-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014148 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56349 PF00046 Homeodomain 5.90E-19 CL0123 Hepe TF