Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0397 ATGTCAGCTCCAAAATTCCTTCACTTCGGCACTGCAATCTCCCGAACAACATCCAGAGCTCTATCGCCACTCCTCTTCCCCAGAAGATTCCCGCCAAAGCTCATATCCTTCATCAACTGCAGCTCTTCTACTGCGCTTGATTCCGTCGGCAGCGTCGGTGGCGGAGTCGATGCTCCTCAACCACACCCCAGCCTCATTCACCACCCCTGGCCTGAATGGGTTTCCTTCGTCGATGGCCTGAAGACCAAAGGTTACTTGATCGAACCTCCTTCAGAAGACGCAAACGGAGACGGGAGCGGTGGCGATGCAGCTACGCCTTCCGATATTGATTACAGCGACATGAACGTGTTGAAGGATCCTTGCCTCAACTTTGCGCGCGATCGCTACGATATTTTCAAGTCATTGTCCACAGATGATATTCAAACGGTTGTGAAGGGTGGATGTCCCAATCTCTTCCGGAAAGTTGTTAATTCAGCTAAAAGGTTGAGGGCTTATGTGCAACTAGATGAAGGGGACGTTTGTAGTACTTGCAACCTTCGAGGCTCATGTGATAGAGCTTATGTTATTTTAAAGGAAACTGAAGCAACTGCAAGGACTGTGGATATAGCTCGATTATTGTTGACCTATGCATTGGATCCACTTGTTTTGTCTGGAGGGGACAGACCTTTGGGTAGAGAGCATGTTGAAGTCTCTGTGAGGAAATTGCTTTCTGAGCTATTTGAACTGAGTAAAAAACCCATTGATGCAGCAGCGGTGAAGGCTGATACAAAATCACCCTCAAGAAAAGAAAAACCATCAAAATTTTCAAATGATGCCTTATCTAAAGATGTTGAGATGAAGAGAGGAGATTGGATGTGTACAAAGTGCAATTTTTTGAATTTTTCGAGAAACAGAAGATGTTTAAAATGTAGTGAAGATGGTCCTAAAAGAGTTCATGCAAATGATATCGAAATGAAGAGTGGAGATTGGACCTGTCCAGAGTGTAACTTTATGAACTTCTCAAGAAATATTCACTGCTTAAAGTGCAAAACAGAGGGGCCGAAGAAGATTGTTGACGATGAAATTGAAATGAAGAAGGGAGATTGGGTCTGCTCGCAATGCACATTCATGAACTTTGCTAGTAACAAGAAATGTTTGCGTTGCCGAGAACATCGTCCAAAGAGGGAGCTTAATCCGGGAGAATGGGAATGCCCCTCATGTGACTTTTTGAATTACAAAAGGAACATGAGCTGCCACAAGTGCAATGTTGAGCGCCCTAAACAAAAAATAAGTGCAGAGTATGAGGAGCAACTATGGGAGTCACCCAGGGAAAGATAA 1317 44.5 MSAPKFLHFGTAISRTTSRALSPLLFPRRFPPKLISFINCSSSTALDSVGSVGGGVDAPQPHPSLIHHPWPEWVSFVDGLKTKGYLIEPPSEDANGDGSGGDAATPSDIDYSDMNVLKDPCLNFARDRYDIFKSLSTDDIQTVVKGGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCDRAYVILKETEATARTVDIARLLLTYALDPLVLSGGDRPLGREHVEVSVRKLLSELFELSKKPIDAAAVKADTKSPSRKEKPSKFSNDALSKDVEMKRGDWMCTKCNFLNFSRNRRCLKCSEDGPKRVHANDIEMKSGDWTCPECNFMNFSRNIHCLKCKTEGPKKIVDDEIEMKKGDWVCSQCTFMNFASNKKCLRCREHRPKRELNPGEWECPSCDFLNYKRNMSCHKCNVERPKQKISAEYEEQLWESPRER 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3555850 3564789 + Hsped.09g03970.1 Hepe09g0397 579081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0397 438 SUPERFAMILY Ran binding protein zinc finger-like 275 307 IPR036443 -
Hepe09g0397 438 SUPERFAMILY Ran binding protein zinc finger-like 389 421 IPR036443 -
Hepe09g0397 438 ProSiteProfiles Zinc finger RanBP2 type profile. 319 348 IPR001876 -
Hepe09g0397 438 ProSitePatterns Zinc finger RanBP2-type signature. 395 414 IPR001876 -
Hepe09g0397 438 ProSiteProfiles Zinc finger RanBP2 type profile. 391 420 IPR001876 -
Hepe09g0397 438 SUPERFAMILY Ran binding protein zinc finger-like 313 347 IPR036443 -
Hepe09g0397 438 SUPERFAMILY Ran binding protein zinc finger-like 354 387 IPR036443 -
Hepe09g0397 438 SMART zf_4 282 306 IPR001876 -
Hepe09g0397 438 SMART zf_4 360 384 IPR001876 -
Hepe09g0397 438 SMART zf_4 393 417 IPR001876 -
Hepe09g0397 438 SMART zf_4 321 345 IPR001876 -
Hepe09g0397 438 ProSitePatterns Zinc finger RanBP2-type signature. 323 342 IPR001876 -
Hepe09g0397 438 MobiDBLite consensus disorder prediction 87 107 - -
Hepe09g0397 438 ProSitePatterns Zinc finger RanBP2-type signature. 362 381 IPR001876 -
Hepe09g0397 438 PANTHER ZINC FINGER PROTEIN 307 349 - GO:0003729(PANTHER)|GO:0005737(PANTHER)
Hepe09g0397 438 Gene3D - 388 422 - -
Hepe09g0397 438 Gene3D - 272 310 - -
Hepe09g0397 438 Gene3D - 311 349 - -
Hepe09g0397 438 Gene3D - 350 387 - -
Hepe09g0397 438 MobiDBLite consensus disorder prediction 251 272 - -
Hepe09g0397 438 ProSiteProfiles Zinc finger RanBP2 type profile. 280 309 IPR001876 -
Hepe09g0397 438 Pfam Zn-finger in Ran binding protein and others 319 347 IPR001876 -
Hepe09g0397 438 Pfam Zn-finger in Ran binding protein and others 281 304 IPR001876 -
Hepe09g0397 438 Pfam Zn-finger in Ran binding protein and others 358 382 IPR001876 -
Hepe09g0397 438 ProSiteProfiles Zinc finger RanBP2 type profile. 358 387 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0397 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2318 Hepe-Chr8:63058903 Hepe09g0397 Hepe-Chr9:3555850 6.05e-48 dispersed
Hepe09g0397 Hepe-Chr9:3555850 Hepe10g1464 Hepe-Chr10:51514149 2.95e-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37