Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0426 ATGGGCGCCCTTCCCAATTCCTTCTCCTTCTTCATCTTCTCTCTGATTTTCCTTTTCTCCGTCGTCCCTCCGCCCGTCGCCGCTGCCGACGGAGCTCCGGACCTCCTCCTTCCTCACCCATTTCCTCATCAGGCCTTAGAGGAAACTGTTTTCATTGCTTCTCCGCCTCCGTTGTCCTCTGCTCCTCCTCCGGAGGAGAAACCCATCTACTCTCCATTCCGGCCGAGCATGGCGGTGGTGGTCGGCGTTCTTACCACCACTTTCTCCATCACATTCCTTCTCCTTCTCTACGCCAAACACTGCAAGCGTGGGAATGCGGTGGTGGTCGGATACTCGAGACACCCAAATTTGAATTTGGGCATACCGAGCTTCTCGACGAGGAAGAACTCTGGCATCGACCAGTCGGTAATCGAATCGCTTCCGATATTCCGATTCGGGTCGTTGAGCGGGCAGAAGGACGGCCTGGAATGCGCCGTTTGCCTCAACAAATTCGAGCCAACGGAGATTCTCAGACTCCTCCCTAAATGCAAACATGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCGCTCTGCCGCTACCGAGTCGACCCAGAGGACGTCTTATTAATCGAAGACGTCAATATATTCCTCCACCCCCCGCCGCCTCCGCCACCACCGCCGCCGCGGGATTCGAATTCGAAGGATGTAGTGTTGAACATAGAACAGGGGAGAAGAAACAGCAAGGCCGGATCAGGGAGAGTCGCCGGCAGAGTCGCTGCCGGCAGAGTCTCCGGCAGACACTCGTCTGTTGGGGAGAAGCGAACCGGTGAGTCCAGTAACCAGGATCCAGCATTGTTGAGACGGTCACTCGACAGTAAGAGAAGCGAAGCAGTGGCAGTCGGGTGCTTCGATCGGCACCGGAAGGACGGGTTACTCTTGCCGGAAGAGAAAACAAATCAAACCCAGATTCAGATTCAGAATCAGAACAGATTTGAGCACCGGATCATAGTATCACCGAGGATGCCGGTGAGGGTGCAGGGGCAGGGGCAGGGGCAGCAGAGATGGAGCAATGTAGAAGCGTCGGATCTGCTGTATCTACGGTCGGAATTGATAATCTCTGACAGCCGCAGATTTTCCGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATGATAGGGAAGCAGGCCGGAAAAGGGACCGGCTTGATGATGATGAAGATGGCAGATGTGTAA 1245 55.02 MGALPNSFSFFIFSLIFLFSVVPPPVAAADGAPDLLLPHPFPHQALEETVFIASPPPLSSAPPPEEKPIYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRHPNLNLGIPSFSTRKNSGIDQSVIESLPIFRFGSLSGQKDGLECAVCLNKFEPTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLHPPPPPPPPPPRDSNSKDVVLNIEQGRRNSKAGSGRVAGRVAAGRVSGRHSSVGEKRTGESSNQDPALLRRSLDSKRSEAVAVGCFDRHRKDGLLLPEEKTNQTQIQIQNQNRFEHRIIVSPRMPVRVQGQGQGQQRWSNVEASDLLYLRSELIISDSRRFSVASLPPELKRQRRMGMIGKQAGKGTGLMMMKMADV 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3869056 3870300 + Hsped.09g04260.1 Hepe09g0426 579110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0426 414 SMART ring_2 157 198 IPR001841 -
Hepe09g0426 414 SUPERFAMILY RING/U-box 137 204 - -
Hepe09g0426 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 59 384 - -
Hepe09g0426 414 Pfam Ring finger domain 156 199 IPR001841 -
Hepe09g0426 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 206 IPR013083 -
Hepe09g0426 414 MobiDBLite consensus disorder prediction 243 290 - -
Hepe09g0426 414 FunFam RING-H2 finger protein ATL43 132 206 - -
Hepe09g0426 414 CDD RING-H2_EL5-like 156 199 - -
Hepe09g0426 414 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2350 Hepe-Chr8:63682922 Hepe09g0426 Hepe-Chr9:3869056 2.89e-25 dispersed
Hepe09g0426 Hepe-Chr9:3869056 Hepe09g0787 Hepe-Chr9:7682684 1.64e-48 dispersed
Hepe09g0426 Hepe-Chr9:3869056 Hepe03g0402 Hepe-Chr3:5746647 6.20e-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0426 K19041 - csv:101203916 551.592