Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0430 ATGGGAGATCAAGATGAGCTCTGCAACATTAGGCTTGGCCTTGGATTGGGATTTGGTGAATATGTCCCAAAAAAGATGCAAAAAATCAACAAAAATCCCAAATTTTTCTCTGATCATCATCATCTCTCTTTCACTCTCATTCCAAAAGAGGAATTAGAAGCCATTAATTCAAGTGATCATTTCAAGAAGAGATCAATCAGAAGCAATGAAGAAACATCCCAAGATTCATCCTTTGGAAGAAGAGATCACTCTTCCAATACTGATAATATTAATAATTACAACAATGCCATTAGTCGCTCAGAAACAGAAAGACACAGAAAAAAGCTTAGGCTTTCTAAAGAACAGTCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCGGCTCAAAAGCAGACACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAGTTGAAGCAAACGGAAGTAGATTGCGAGTTTTTGAAGAAATGTTGCGAAAGGCTGAATGAAGAGAATCGAAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATAAAACTTGGAGCTTCACAGTTGTATATTCAGCTACCTAAGGCGGCGACGCTCACAATTTGCCCTTCATGCGACAAAATTACCAGGACAGCCGCCGCCAACGCCGCCGTGGAGGCCCATTCTCCGCCACAATAG 717 40.86 MGDQDELCNIRLGLGLGFGEYVPKKMQKINKNPKFFSDHHHLSFTLIPKEELEAINSSDHFKKRSIRSNEETSQDSSFGRRDHSSNTDNINNYNNAISRSETERHRKKLRLSKEQSTLLEESFKLHTTLNPAQKQTLAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAVEAHSPPQ 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3892704 3893870 - Hsped.09g04300.1 Hepe09g0430 579114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0430 238 Coils Coil 161 195 - -
Hepe09g0430 238 SUPERFAMILY Homeodomain-like 91 163 IPR009057 -
Hepe09g0430 238 Pfam Homeodomain 106 160 IPR001356 GO:0003677(InterPro)
Hepe09g0430 238 SMART halz 162 205 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe09g0430 238 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677(InterPro)
Hepe09g0430 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 227 IPR050762 -
Hepe09g0430 238 CDD homeodomain 106 163 IPR001356 GO:0003677(InterPro)
Hepe09g0430 238 MobiDBLite consensus disorder prediction 58 82 - -
Hepe09g0430 238 MobiDBLite consensus disorder prediction 83 98 - -
Hepe09g0430 238 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe09g0430 238 MobiDBLite consensus disorder prediction 58 105 - -
Hepe09g0430 238 SMART HOX_1 104 166 IPR001356 GO:0003677(InterPro)
Hepe09g0430 238 Pfam Homeobox associated leucine zipper 162 194 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe09g0430 238 Gene3D - 110 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0591 Hepe-Chr7:6437643 Hepe09g0430 Hepe-Chr9:3892704 3.47e-49 dispersed
Hepe09g0430 Hepe-Chr9:3892704 Hepe10g1711 Hepe-Chr10:53819977 6.19e-07 dispersed
Hepe09g0430 Hepe-Chr9:3892704 Hepe03g1708 Hepe-Chr3:74003902 1.95e-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56350 PF00046 Homeodomain 8.70E-16 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0430 K09338 - csv:101203427 288.885