Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0437 ATGGCGGTCGATCTCGCGGCGTTTCCGGCGAACAGAGACGATCATAAAACCGCCATTCAAGAAGCCGCCGCCGCTGGTTTACAGAGTATGGAGAATCTAATCCGCCTCTTTTCCAAACAAGCCTCTCAAAGTCAAAGCCCTAATCTGATCGATTGCTCTAACGCCACCGATTTCACCGTCTCCAAATTCAAGCGAGTGATTTCTCTATTGAATCGAACCGGCCACGCTCGCTTCCGCCGCGGACCGTCCTCTGTTTCCGATTCCCCTAATCCCGTCCTAAATTCCCTCGATTCCCCAAATCGAACCCCGAAGATCGATTTTGCCAAACCTAATTTCACTCCCGTCGCGAAATTCCCCGATTCTAAGGCTCCGACTGAGTCCACTACGACGTCGTCTTTCATGTCCACGATTACCGGCGACGGCAGCGTTTCCAACGGGAAGATTGGTCTCTCACTCTTTACTCCACCCGCGGCGGCGGTTTCCTCCGGTAAGCCGCCGCTGTCGTCGAAGAGGAAGTGCGAGGATGGATCTCGATTTGGTTGCAAGGTTTCTTCCAAGCCCTGTCACTGTGCGAAGCGAAGGAAATCGGGAGTGAAGGAGACTGTACGAGTTCCGGCGATCAGTTCTAAGATTGCCGATATACCTTCCGATGAATATTCTTGGAGAAAGTACGGACAAAAGCCCATCAAAGGCTCTCCCTATCCTAGAGGATATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAAAAAGTGGAAAGAGCTCGTGACGATCCGGCGATGCTCCTCGTAACTTACGACGGCGATCACCGTCACCCGCAGGCTACGGTCACCACCAATGGTAGCGTGAGCTTCGTCTGCCAAAAGAGTTGA 876 52.74 MAVDLAAFPANRDDHKTAIQEAAAAGLQSMENLIRLFSKQASQSQSPNLIDCSNATDFTVSKFKRVISLLNRTGHARFRRGPSSVSDSPNPVLNSLDSPNRTPKIDFAKPNFTPVAKFPDSKAPTESTTTSSFMSTITGDGSVSNGKIGLSLFTPPAAAVSSGKPPLSSKRKCEDGSRFGCKVSSKPCHCAKRRKSGVKETVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPAMLLVTYDGDHRHPQATVTTNGSVSFVCQKS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3944685 3946967 - Hsped.09g04370.1 Hepe09g0437 579121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0437 291 Pfam WRKY DNA -binding domain 217 274 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe09g0437 291 MobiDBLite consensus disorder prediction 79 105 - -
Hepe09g0437 291 Pfam Plant zinc cluster domain 170 213 IPR018872 -
Hepe09g0437 291 SMART WRKY_cls 215 275 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe09g0437 291 MobiDBLite consensus disorder prediction 83 101 - -
Hepe09g0437 291 Gene3D WRKY domain 198 276 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe09g0437 291 ProSiteProfiles WRKY domain profile. 210 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe09g0437 291 FunFam WRKY transcription factor 65 199 276 - -
Hepe09g0437 291 SUPERFAMILY WRKY DNA-binding domain 213 275 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe09g0437 291 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 280 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1792 Hepe-Chr1:82975299 Hepe09g0437 Hepe-Chr9:3944685 6.19e-59 dispersed
Hepe01g2092 Hepe-Chr1:85524699 Hepe09g0437 Hepe-Chr9:3944685 2.01e-92 dispersed
Hepe08g1152 Hepe-Chr8:11676588 Hepe09g0437 Hepe-Chr9:3944685 8.21e-50 dispersed
Hepe09g0437 Hepe-Chr9:3944685 Hepe10g1775 Hepe-Chr10:54519892 5.51e-18 dispersed
Hepe09g0437 Hepe-Chr9:3944685 Hepe04g1263 Hepe-Chr4:68169831 4.86e-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56351 PF03106 WRKY 1.30E-25 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0437 - - - 0.0