Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0452 ATGGACGGTATGGGAGACGATTGCTTGAATTACTTGGGGGATAGCATGTTCGTACAAAGCGAAAGAAGTTGGGGATTCGATTTCGACGAGCCGGTTTCTGGTTACTACGATTCCAGTTCGCCGGAGGGATTTCTCTCGTCGTCGGCGGCTTCGAAGAACATCGTATCGGAGAGGAATAGGAGGAGGAAGCTCAACGAGAGGCTTTTCGCACTTCGATCGGTCGTTCCCAATATCACCAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCCAAAATCTGCACGAGCAAGACAGGAGGATTCAAGCTGAAATTTATGAGCTGGAATCGGGAAAATTGAAGAAGATTCCAGAGTATGATGGATTGTTGATCGGATCAAAGAGGAAGAAAACCGAGAAGAAGTTCAGCTATGATTATTCTCCTGCTTTAAGAACTTCTTCTTCCCCCATTGAAGTGCTGAATTTGAGTGTAACATATATGGGGGAAAGAACAATGGTGGTGAGCATGAGTTGCTGTAAACGAGCAGATTCAATGGTTAAATTGTGTGAAGTTTTTGAATCATTGAAGCTCAAGATCATTACTGCTAACATTACTGCTGTTTCTGGAAGGCTTTTGAAAACTCTCTTCATTGAGGCTGAGCAAGAGGATAGAGAATACTTGAAGATTAAAATAGAAACAGCAATTGCAGGTCTTAATGATCCACACCCCCACGAGTATCTGATCCCACAACCACACATAAGAGAGATCCAAGAAAATCAATCTCGAGCTTTTTAG 783 42.53 MDGMGDDCLNYLGDSMFVQSERSWGFDFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIQNLHEQDRRIQAEIYELESGKLKKIPEYDGLLIGSKRKKTEKKFSYDYSPALRTSSSPIEVLNLSVTYMGERTMVVSMSCCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTLFIEAEQEDREYLKIKIETAIAGLNDPHPHEYLIPQPHIREIQENQSRAF 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4087830 4092753 + Hsped.09g04520.1 Hepe09g0452 579136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0452 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 112 IPR036638 GO:0046983(InterPro)
Hepe09g0452 260 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983(InterPro)
Hepe09g0452 260 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Hepe09g0452 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
Hepe09g0452 260 Gene3D - 46 114 IPR036638 GO:0046983(InterPro)
Hepe09g0452 260 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Hepe09g0452 260 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 223 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0930 Hepe-Chr8:8561338 Hepe09g0452 Hepe-Chr9:4087830 2.91e-17 dispersed
Hepe09g0452 Hepe-Chr9:4087830 Hepe10g0404 Hepe-Chr10:4507374 6.24e-11 dispersed
Hepe10g1639 Hepe-Chr10:53096347 Hepe09g0452 Hepe-Chr9:4087830 1.73e-22 transposed
Hepe08g2086 Hepe-Chr8:59143119 Hepe09g0452 Hepe-Chr9:4087830 5.49e-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56352 PF00010 HLH 1.00E-11 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0452 - - - 0.0