Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0476 ATGAACTCTCAAAATTGGTTGCCTTTCTCTCTCTCTAACAACAATCCAAACTCTCTCTCTCTTTTCCATCCTAATCATACACATGATTTATCTATCTACTCCGCCCCCAAGCTCGAGGACTTTCTCCGGGGAGCAGCAGCAACAACCACTCCTCCGCCGCAGCCACCGCCTCCCTTTCACTTCTCTGCCCACCAAACTCCGCCTCACATTTTCGATTCCGATCTCAAAACCATAGCGGCTACTTTTCTCCGTGGACCCCCAACAACCCACTTGCCCGAACAATATCAGATTCACCATCTCCACGCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCAACCCGATTCCCCACCGCCACCTCCTAAGAAGGCCGTCGATACTTTTGGCCAACGCACCTCCATCTACCGCGGCGTTACAAGATGGACTGGTCGATATGAAGCTCATTTATGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGAAAAGGAAGACAAGGTGGTTATGATAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTTGCCGCTCTCAAATATTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGAGTATGAAAAAGAGCTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAAAAGCAGCGGTTTTTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACATTCAGCACTCAAGAAGAAGCAGCCGAGGCCTATGATATTGCAGCCATCAAATTCAGAGGCCTCAACGCGGTGACCAACTTCGACATCAGCCGCTACGACGTAAAGAGCATTGCCAACAGCAACCTCCCCATCGGAGGGATGTCGGGCGCCAAATCTAAAACCATCTCCGACTCCACCACCACCGACCGATCGACCGAAGATCGCTATATCCACCATTCTCCAGCGTCCTCCACCGCGACTTTCATGTCGTCGCATCCCAACAATAACTCCTCCACTCTTAGCTTCACAATGCCCATCAAACAAGACCCATCCGATCAATATTGGTCCATCCTCGGCTACAACCCCGGCGCCTTCAACACAAACCTCCCCAAACCCGACAACATTCCACCGTCGTCGTCGTCGCCAATGACAATGTTCCAACAATCTTCAAACACCGGATCCACAATGTTTCCCGCCATCACCGACCTAGCTTCGAGCGGTTCACCGCTTAACGAAGGCGGCGTATACGACGGCGGTGTTTACGTCGAGCAACAACAACAATATGCAACGACACAAATTGCATTAAGCAGCGGCATAAGCATTGAGATTGGGCAATCAATGAGGGGATTCGAAGCTCATCATGCAAAACCAAGTCTTTTTCATACGCCAATATTTGGAATAGAATGA 1446 49.86 MNSQNWLPFSLSNNNPNSLSLFHPNHTHDLSIYSAPKLEDFLRGAAATTTPPPQPPPPFHFSAHQTPPHIFDSDLKTIAATFLRGPPTTHLPEQYQIHHLHAPPPPPPPPPQPDSPPPPPKKAVDTFGQRTSIYRGVTRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSEYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIANSNLPIGGMSGAKSKTISDSTTTDRSTEDRYIHHSPASSTATFMSSHPNNNSSTLSFTMPIKQDPSDQYWSILGYNPGAFNTNLPKPDNIPPSSSSPMTMFQQSSNTGSTMFPAITDLASSGSPLNEGGVYDGGVYVEQQQQYATTQIALSSGISIEIGQSMRGFEAHHAKPSLFHTPIFGIE 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4398524 4401433 - Hsped.09g04760.1 Hepe09g0476 579160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0476 481 SUPERFAMILY DNA-binding domain 229 290 IPR016177 GO:0003677(InterPro)
Hepe09g0476 481 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 98 349 - -
Hepe09g0476 481 MobiDBLite consensus disorder prediction 98 126 - -
Hepe09g0476 481 MobiDBLite consensus disorder prediction 99 123 - -
Hepe09g0476 481 ProSiteProfiles AP2/ERF domain profile. 230 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0476 481 Pfam AP2 domain 231 280 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0476 481 CDD AP2 132 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0476 481 CDD AP2 229 290 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0476 481 SUPERFAMILY DNA-binding domain 132 196 IPR016177 GO:0003677(InterPro)
Hepe09g0476 481 Gene3D AP2/ERF domain 133 196 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0476 481 Gene3D AP2/ERF domain 230 290 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0476 481 SMART rav1_2 133 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0476 481 SMART rav1_2 230 294 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0476 481 ProSiteProfiles AP2/ERF domain profile. 133 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0476 481 FunFam AP2-like ethylene-responsive transcription factor 229 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0569 Hepe-Chr7:6096763 Hepe09g0476 Hepe-Chr9:4398524 3.38e-109 dispersed
Hepe08g0110 Hepe-Chr8:926720 Hepe09g0476 Hepe-Chr9:4398524 1.34e-85 dispersed
Hepe08g1924 Hepe-Chr8:51016520 Hepe09g0476 Hepe-Chr9:4398524 2.00e-115 dispersed
Hepe09g0476 Hepe-Chr9:4398524 Hepe09g0546 Hepe-Chr9:5155113 1.56e-79 dispersed
Hepe04g0911 Hepe-Chr4:63387122 Hepe09g0476 Hepe-Chr9:4398524 4.91e-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56355 PF00847 AP2 5.80E-06 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0476 K09285 - csv:101210453 596.66