Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0521 ATGTTGATAACAGTCAGAGCTTCTTCTTCGCCCCTTTGCTTCACCCTCTCCACTCAATCTCTTACCAATTCTAAGCGCTTTCCAAGACCTACACTTTCACTCACCCGAGCTTCCTTCTCTTCTCCTACCAAGCCCACCGCCACCAAATCCTGGAACCTCGGCCTCTTTTCCAACAGTTCTGAGAGCTCAGTTTTTGATCCATTGGGCATCCGTCCAGATCTTTCTTCTGAATTAAGTAGTACGTGGGAAAGTTTTCTTGGCTTTTGGGGGCAAACATTTTACAGTGCTTCAAACACAAAAAAAGATAAATCTCCCTCAGCACGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGATTTCTTCAAAGGTCCATTGCCCGGAAAATTTCTACAGCTCTTGGGCTATTTAGCACTATCAAGGCTTGGAATCTATATCCCTCTTGGTGGAGTGAACCGAGAGGCCTTTGTTGGGAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCTGGAGGAGGCATTGGTAGGCTAGGGATATGCTCCCTTGGGATTGTTCCCTTCATCAATGCACAAATTGTCTTCCAGCTTCTTGCACAAATTTATCCAAAATTGCAAGAGCTTCAGAAAAGAGAAGGCGAAGCAGGGCGAAAGAAAATTCTTCAATATACTCGATATGCCTCAGTTGGGTTTGCAATCGTACAAGCAATTGGCCAAGTTCTCTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAATGGGCGCTCTCTTCTGTTACTTTATTAACACTTGGTTCAGTCTTAACAACGTACATTGGGGAAAGGATCACAGACCTAAAGCTAGGAAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATTTACCAGCATCCTTTGGAAGGACCGCTGCACAGGCTTTACAGGATGGTAACTATGTTGGATTAGTTGCTATCATGATCTCCTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCAGAAAGGAAAATCCCGATCAATTATGCTTCAAGATACACAAGCAGAGGTGGAGGACTTGAGAAAGCTGCTTACCTGCCCTTCAAGGTAAATAGTTCTGGTGTAATGCCGATCATTTTCTCTACATCAACATTAGCCCTTCCGGGTACTCTAGCTCGCTTCACGGGGTTATCCGTCCTAAAGAATGCTGCACTTGCTTTAAATCCAGGAGGTTCATTCTATCTGCCAACAAACATCCTTATGATAGCCTTCTTCAACTATTACTACACATTCCTACAGTTGGATCCCGATGATGTGAGTGAACAATTGAAGCGGCAGGGTGCTTCGATTCCCCTCGTCCGACCGGGCAAAAGTACAGCTTCATATCTGAAAGCGGTTCTAAGTCGGATTTCAGTACTTGGTTCAGCCTTCTTGGCAATCCTTGCGGCTGGTCCTGCGGTGATTGAGCAAACAACACATCTGACAGCGTTTCGAGGATTTGCGGGAACCTCGGTTCTTATTCTTGTTGGTTGTGCTACAGACACGGCCAGAAAAGTACAAGCTGAGATAATCTCACAGAAGTATAAGAACATAGAGTTCTATGACATTGATAAGTATACTCCTTGA 1629 44.08 MLITVRASSSPLCFTLSTQSLTNSKRFPRPTLSLTRASFSSPTKPTATKSWNLGLFSNSSESSVFDPLGIRPDLSSELSSTWESFLGFWGQTFYSASNTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWALSSVTLLTLGSVLTTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQALQDGNYVGLVAIMISFFLLVLGIVYVQEAERKIPINYASRYTSRGGGLEKAAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKNAALALNPGGSFYLPTNILMIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASYLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDKYTP 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4881511 4885647 + Hsped.09g05210.1 Hepe09g0521 579205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0521 542 FunFam Preprotein translocase subunit SECY, chloroplastic 124 529 - -
Hepe09g0521 542 Hamap Protein translocase subunit SecY [secY]. 121 533 IPR026593 -
Hepe09g0521 542 ProSitePatterns Protein secY signature 1. 184 203 IPR030659 -
Hepe09g0521 542 NCBIfam preprotein translocase subunit SecY 132 529 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Hepe09g0521 542 ProSitePatterns Protein secY signature 2. 276 293 IPR030659 -
Hepe09g0521 542 SUPERFAMILY Preprotein translocase SecY subunit 125 523 IPR023201 -
Hepe09g0521 542 Pfam SecY 185 516 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Hepe09g0521 542 Gene3D SecY subunit domain 124 529 IPR023201 -
Hepe09g0521 542 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 124 532 IPR002208 GO:0005048(PANTHER)|GO:0006616(PANTHER)|GO:0008320(PANTHER)|GO:0009535(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)
Hepe09g0521 542 PRINTS Preprotein translocase SecY subunit signature 225 248 - -
Hepe09g0521 542 PRINTS Preprotein translocase SecY subunit signature 183 203 - -
Hepe09g0521 542 PRINTS Preprotein translocase SecY subunit signature 283 306 - -
Hepe09g0521 542 PRINTS Preprotein translocase SecY subunit signature 502 520 - -
Hepe09g0521 542 PRINTS Preprotein translocase SecY subunit signature 374 393 - -
Hepe09g0521 542 PRINTS Preprotein translocase SecY subunit signature 413 435 - -
Hepe09g0521 542 PRINTS Preprotein translocase SecY subunit signature 133 151 - -
Hepe09g0521 542 PRINTS Preprotein translocase SecY subunit signature 257 282 - -
Hepe09g0521 542 PRINTS Preprotein translocase SecY subunit signature 468 486 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0521 K10956 - csv:101222431 974.541