Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0542 ATGGTTTCTAAATTCTTCTGTTTGATCATTCTCTCTTCTGCATTCCTTTGCCTTTCCTATGAACCTCGGAACCCAGAAGTCGAAGCTCTGATTAATGTCAAGATGGCATTGAATGATCCCCACGCTGTTCTCAGCAATTGGGATGAGGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACCTGCTCCCCTGAGAATCTCGTTATAGGACTAGGTGCTCCGAGCCAGTCTCTTTCCGGAAGCTTGTCTGGGGCGATTAGGAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAACAACATTTCTGGTCCAATTCCCATTGAACTTGGAACTCTCCCATTGCTTCAAACATTAGATCTCTCAAACAATCGTTTCTCTGGACCAATACCAGCATCTTTTGGTCAGCTGAACAATCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGCCCAGTGCCTGTTTTCCCAGCCAGAACATTCAATGTGGTGGGAAATCCAATGATTTGTGGAAGTAGTCCTAATGAAGGTTGCTCTTCCTCAGCCAATGCCGTTCCTCTTTCTTTCTCTCTAGAATCCTCCCCTGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGCTTTTCTGATGCTCCTAGCACTTGGAATTCTTTGGCGCAGAAAAACTCTCAAGACCAAAACCATCCTAGACATCAATGTTGGGAATCAAGAAGTTGGACTAGTGCGGCTAGGGAACCTGAGGAACTTCAGTTTCAAAGAGCTGCAGTTAGCAACAGACCATTTTAGTTCAAAACATATACTTGGGGCTGGAGGGTTTGGAAATGTGTACAAGGGAAAGCTAGGAAATGGGAGTATGGTGGCAGTGAAACGGCTAAAAGATGTAACGGGCAGCACTGGAGAGTCACAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTAGGTTGATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCCTGGACTGGAACACAAGGAAGAGAATAGCAATTGGCGCTGCAAGGGGTCTGCTGTACCTACACGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGATGACTACTGCGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTCACCACTGCTGTTCGTGGCACTGTTGGCCACATCGCTCCGGAGTATCTTTCGACTGGCCAATCTTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATTAACCAGAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGCAACAATTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTCGAAGGGGATGGCCTTGTTGAGAAATGGGCAGCATCCCACACTCATGATGACTTAAATGTCAACCTTTTTCATTCACGGAACAGCTGCAAAAGTACATACAACAACCCCACAAACACATTGAAGAATAATGGCAATGATCGAGATCATTCAAGCATGTTAAGTTTAACAATGGACGATGATGATGACGAGCGATCTTTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1920 46.09 MVSKFFCLIILSSAFLCLSYEPRNPEVEALINVKMALNDPHAVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIRNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPASFGQLNNLRYLRVNNNSLSGPFPLSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSSPNEGCSSSANAVPLSFSLESSPGRLRSKRIAVALGVSLSCAFLMLLALGILWRRKTLKTKTILDINVGNQEVGLVRLGNLRNFSFKELQLATDHFSSKHILGAGGFGNVYKGKLGNGSMVAVKRLKDVTGSTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHDDLNVNLFHSRNSCKSTYNNPTNTLKNNGNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5108216 5112752 - Hsped.09g05420.1 Hepe09g0542 579226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0542 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 639 - -
Hepe09g0542 639 FunFam Somatic embryogenesis receptor kinase 1 262 369 - -
Hepe09g0542 639 SUPERFAMILY Protein kinase-like (PK-like) 273 563 IPR011009 -
Hepe09g0542 639 MobiDBLite consensus disorder prediction 593 639 - -
Hepe09g0542 639 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Hepe09g0542 639 Gene3D Transferase(Phosphotransferase) domain 1 370 581 - -
Hepe09g0542 639 SUPERFAMILY L domain-like 24 188 - -
Hepe09g0542 639 SMART serkin_6 293 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe09g0542 639 Gene3D Ribonuclease Inhibitor 23 205 IPR032675 -
Hepe09g0542 639 FunFam Putative LRR receptor-like serine/threonine-protein kinase 23 205 - -
Hepe09g0542 639 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524(InterPro)
Hepe09g0542 639 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515(InterPro)
Hepe09g0542 639 MobiDBLite consensus disorder prediction 593 613 - -
Hepe09g0542 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe09g0542 639 Pfam Protein tyrosine and serine/threonine kinase 296 562 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe09g0542 639 FunFam Somatic embryogenesis receptor-like kinase 1 370 582 - -
Hepe09g0542 639 ProSiteProfiles Protein kinase domain profile. 293 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe09g0542 639 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515(InterPro)
Hepe09g0542 639 Gene3D Phosphorylase Kinase; domain 1 263 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0542 Hepe-Chr9:5108216 Hepe10g0030 Hepe-Chr10:283159 3.53e-197 dispersed
Hepe09g0542 Hepe-Chr9:5108216 Hepe02g3235 Hepe-Chr2:81933331 7.53e-219 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73119 PF07714 PK_Tyr_Ser-Thr 1.90E-42 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0542 - - - 0.0