Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe09g0546 | ATGGCGAAATCCACATCGCAGCAAGTTGAGGTTAGGGAGGCGAAGAACAAGAATAATGTAGTAAATAAAAATGGTGTTATGAAGACCAAAACAAAGCGAACTCGTAGGAGCGTCCCCAGAGATTCTCCTCCTCAACGAAGCTCCATTTACCGCGGCGTTACTAGACATCGATGGACGGGGAGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGGCAAGGTGCATACGACGACGAGGAAGCAGCAGCCCATGCGTACGACCTTGCAGCACTGAAATACTGGGGTCCAGAAACCATTCTTAATTTTCCGCTGACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCGAGAGAAGAATACATTGGGTCGTTGAGAAGAAAAAGCAGTGGGTTTTCTCGGGGGGTTTCCAAATACAGAGGCGTTGCAAGACACCATCACAATGGAAGATGGGAAGCCCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTGGGAACATATGCGACGCAAGAAGAAGCAGCCACAGCGTACGATATCGCGGCGATAGAGTATCGTGGACTTAACGCCGTCACAAATTTCGACCTAAGCCGTTACATCAAGTGGCTAAAACCAAGCAACGACGTCGTTTACGATAACAACAACATCTTAAACGCGGATTCCATCCTCCCAAGCCCCAAACAAGAACTCGACCTAGGTCTCTTCCCGTCGGAGGACCAAAATCAAACCAGCGCCGATTCGGCAATGGCGGAGCCAATAATTGCCTTACCTCCGTCGCACCGATCGACCACCACCACGTCGGCACTCGGCCTCCTGCTCCAATCTTCGAAGTTCAAGGAAATGATGGAGATGAACTCGGCGGCGGAGTCTGATCCGTCGACGCCGTCGTCGTCGGACCAGATCGAGCGGCGGCGGTGTTTGTTTCCTGACGATGTTCAGACTTTCTTTGCCTGCGATAGATCAGGATCTTACTGCTATGGAGAAGCGGATGATGCGATTTTTAGCGACTTCAATTCTTTCGTACCGCCGCCGCTGTCGCATTACGATTTTGACGATTAG | 1092 | 50.09 | MAKSTSQQVEVREAKNKNNVVNKNGVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGPETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNNILNADSILPSPKQELDLGLFPSEDQNQTSADSAMAEPIIALPPSHRSTTTTSALGLLLQSSKFKEMMEMNSAAESDPSTPSSSDQIERRRCLFPDDVQTFFACDRSGSYCYGEADDAIFSDFNSFVPPPLSHYDFDD | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5155113 | 5159601 | - | Hsped.09g05460.1 | Hepe09g0546 | 579230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe09g0546 | 363 | ProSiteProfiles | AP2/ERF domain profile. | 148 | 206 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Hepe09g0546 | 363 | Gene3D | AP2/ERF domain | 49 | 114 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | Gene3D | AP2/ERF domain | 147 | 208 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | CDD | AP2 | 147 | 208 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | PRINTS | Ethylene responsive element binding protein signature | 188 | 208 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 112 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Hepe09g0546 | 363 | FunFam | AP2-like ethylene-responsive transcription factor | 48 | 114 | - | - | |
Hepe09g0546 | 363 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 32 | 250 | - | - | |
Hepe09g0546 | 363 | FunFam | AP2-like ethylene-responsive transcription factor | 147 | 208 | - | - | |
Hepe09g0546 | 363 | SUPERFAMILY | DNA-binding domain | 147 | 208 | IPR016177 | GO:0003677(InterPro) | |
Hepe09g0546 | 363 | SMART | rav1_2 | 148 | 212 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | SMART | rav1_2 | 49 | 118 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | Pfam | AP2 domain | 147 | 198 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe09g0546 | 363 | SUPERFAMILY | DNA-binding domain | 48 | 113 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1680 | Hepe-Chr3:73627979 | Hepe09g0546 | Hepe-Chr9:5155113 | 4.53e-137 | dispersed | |
Hepe05g0800 | Hepe-Chr5:19156197 | Hepe09g0546 | Hepe-Chr9:5155113 | 1.57e-61 | dispersed | |
Hepe09g0476 | Hepe-Chr9:4398524 | Hepe09g0546 | Hepe-Chr9:5155113 | 1.56e-79 | dispersed | |
Hepe09g0546 | Hepe-Chr9:5155113 | Hepe10g1430 | Hepe-Chr10:50968401 | 3.98e-42 | dispersed | |
Hepe09g0546 | Hepe-Chr9:5155113 | Hepe08g1600 | Hepe-Chr8:23033301 | 7.97e-96 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56361 | PF00847 | AP2 | 1.50E-09 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe09g0546 | K09285 | - | csv:101219103 | 620.542 |