Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0546 ATGGCGAAATCCACATCGCAGCAAGTTGAGGTTAGGGAGGCGAAGAACAAGAATAATGTAGTAAATAAAAATGGTGTTATGAAGACCAAAACAAAGCGAACTCGTAGGAGCGTCCCCAGAGATTCTCCTCCTCAACGAAGCTCCATTTACCGCGGCGTTACTAGACATCGATGGACGGGGAGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGGCAAGGTGCATACGACGACGAGGAAGCAGCAGCCCATGCGTACGACCTTGCAGCACTGAAATACTGGGGTCCAGAAACCATTCTTAATTTTCCGCTGACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCGAGAGAAGAATACATTGGGTCGTTGAGAAGAAAAAGCAGTGGGTTTTCTCGGGGGGTTTCCAAATACAGAGGCGTTGCAAGACACCATCACAATGGAAGATGGGAAGCCCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTGGGAACATATGCGACGCAAGAAGAAGCAGCCACAGCGTACGATATCGCGGCGATAGAGTATCGTGGACTTAACGCCGTCACAAATTTCGACCTAAGCCGTTACATCAAGTGGCTAAAACCAAGCAACGACGTCGTTTACGATAACAACAACATCTTAAACGCGGATTCCATCCTCCCAAGCCCCAAACAAGAACTCGACCTAGGTCTCTTCCCGTCGGAGGACCAAAATCAAACCAGCGCCGATTCGGCAATGGCGGAGCCAATAATTGCCTTACCTCCGTCGCACCGATCGACCACCACCACGTCGGCACTCGGCCTCCTGCTCCAATCTTCGAAGTTCAAGGAAATGATGGAGATGAACTCGGCGGCGGAGTCTGATCCGTCGACGCCGTCGTCGTCGGACCAGATCGAGCGGCGGCGGTGTTTGTTTCCTGACGATGTTCAGACTTTCTTTGCCTGCGATAGATCAGGATCTTACTGCTATGGAGAAGCGGATGATGCGATTTTTAGCGACTTCAATTCTTTCGTACCGCCGCCGCTGTCGCATTACGATTTTGACGATTAG 1092 50.09 MAKSTSQQVEVREAKNKNNVVNKNGVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGPETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNNILNADSILPSPKQELDLGLFPSEDQNQTSADSAMAEPIIALPPSHRSTTTTSALGLLLQSSKFKEMMEMNSAAESDPSTPSSSDQIERRRCLFPDDVQTFFACDRSGSYCYGEADDAIFSDFNSFVPPPLSHYDFDD 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5155113 5159601 - Hsped.09g05460.1 Hepe09g0546 579230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0546 363 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 MobiDBLite consensus disorder prediction 1 48 - -
Hepe09g0546 363 Gene3D AP2/ERF domain 49 114 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 CDD AP2 147 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 ProSiteProfiles AP2/ERF domain profile. 49 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 MobiDBLite consensus disorder prediction 1 27 - -
Hepe09g0546 363 FunFam AP2-like ethylene-responsive transcription factor 48 114 - -
Hepe09g0546 363 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 32 250 - -
Hepe09g0546 363 FunFam AP2-like ethylene-responsive transcription factor 147 208 - -
Hepe09g0546 363 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677(InterPro)
Hepe09g0546 363 SMART rav1_2 148 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 SMART rav1_2 49 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 Pfam AP2 domain 147 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0546 363 SUPERFAMILY DNA-binding domain 48 113 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1680 Hepe-Chr3:73627979 Hepe09g0546 Hepe-Chr9:5155113 4.53e-137 dispersed
Hepe05g0800 Hepe-Chr5:19156197 Hepe09g0546 Hepe-Chr9:5155113 1.57e-61 dispersed
Hepe09g0476 Hepe-Chr9:4398524 Hepe09g0546 Hepe-Chr9:5155113 1.56e-79 dispersed
Hepe09g0546 Hepe-Chr9:5155113 Hepe10g1430 Hepe-Chr10:50968401 3.98e-42 dispersed
Hepe09g0546 Hepe-Chr9:5155113 Hepe08g1600 Hepe-Chr8:23033301 7.97e-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56361 PF00847 AP2 1.50E-09 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0546 K09285 - csv:101219103 620.542