Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0563 ATGCAAATTCAAACTCATCTTGGACCCGGACCGCTTCTAACCAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGAATCCGGAATCACCTCTGCTGATATTTTGAAGGATGTCATTCTACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTGTGTTCTGATCTCAATCAGAAGCTACCTCAATTTCCCTCTGATGAACCTGGTGGAAGGGAAATTACTTTTAAACGAGTCCTCTTAAATATCTGTCAAGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGCTTAGGCAGATGACTGCCCCTGAGCAAGAGAGCGAGCGCAAAGATAAAGAAAGAAGGCTCAAGCTCCGCACTCTTGGAAATATTAAATTAATCGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATCGTGCAGGAACTATTAGGACCGGATAACAAAACCTGTCCTGCTGAAGAAAATGTCGAGGCCATCTGTCAGTTCTTTAACACCATAGGTAAGCAGCTAGACGAGAACACAAAATCGCGTCGTATAAATGACGTGTACTTTGGCCGATTGAAAGACCTGATTACACACTCTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTATTGATTTGCGTGCTAACAATTGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTAATGAAATACATTCGGAGGCAGAAAAAAATCTGGGATTACGTCCTGGTGCGACTGTCAATATGAGAAACAGTCGTGGCGGTGCGTCTGGTTCTCCTGGGAACACCAGCTCTGGGGGCTTTCCTATTAATCGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCGGGAATGGATAATGACAATTGGGAGGTTCCTAGGGCCCGACCGATACCAAGGGGAGCAGACGGATCTGGTCTTCAGCCTGCTGGACGTGGCCAGACACCGTTGGTTGGCAAAGCATCGGCGTTGAATGCAAGGCTACTACCACAGGGTACTGGTGGGCTCATTAGTAATAAGACTAGTGCTCTATTGCAGGGTGCAGGTGCATCTACTACTCGTCCTGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAAGTTCAAAAACCTATTACGGCAGCAACAGTCCTTCCGCCTGCCGAGAAACCTCAGGTTCCAGCTGCATCTGTAAAACAAGATGATCTCCTCCAAAAGAAAACTCTCTCTCTTCTTGAGGAATATTTCAATATCCGGCTTTTGGATGAAGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCCGAGGTTGTAAAAGAAGCCATTTCCTTAGCCCTAGAGAAAAGTCCACCCTGTGTGGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTGGTGACATTGGGACTGGATGTTTGCTTTATGCTTCTGTGCTCGACGACGCAGGCATCGATTTACCAAAAGCACCCATCTATTTTGGTGAGATAATTGGGAACCTTGTTATATCTGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGCTGCTGTCTTGAAGACGTTTAATTCTAATGTGTCTGGGAAAGGATTATTGGATTCGTTGGCATCCGATATCGAGGAGTGTCGAAGTCTGGCACATTAA 1779 45.87 MQIQTHLGPGPLLTKGILNKLTPEKFDLLKGQLIESGITSADILKDVILLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREELRQMTAPEQESERKDKERRLKLRTLGNIKLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDVYFGRLKDLITHSQLAPRLKFMVRDVIDLRANNWVPRREEVKAKTINEIHSEAEKNLGLRPGATVNMRNSRGGASGSPGNTSSGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPIPRGADGSGLQPAGRGQTPLVGKASALNARLLPQGTGGLISNKTSALLQGAGASTTRPVNFGHGLEPSGQVQKPITAATVLPPAEKPQVPAASVKQDDLLQKKTLSLLEEYFNIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTAGDIGTGCLLYASVLDDAGIDLPKAPIYFGEIIGNLVISGGLDFQVVKEAIKKVEDDRFRKDIFAAVLKTFNSNVSGKGLLDSLASDIEECRSLAH 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5301871 5305419 + Hsped.09g05630.1 Hepe09g0563 579247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0563 592 Pfam MA3 domain 427 539 IPR003891 -
Hepe09g0563 592 Gene3D - 423 586 - -
Hepe09g0563 592 MobiDBLite consensus disorder prediction 263 293 - -
Hepe09g0563 592 FunFam Eukaryotic translation initiation factor isoform 4G-2 12 237 - -
Hepe09g0563 592 Pfam MIF4G domain 15 236 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Hepe09g0563 592 SUPERFAMILY ARM repeat 15 239 IPR016024 -
Hepe09g0563 592 SUPERFAMILY ARM repeat 427 580 IPR016024 -
Hepe09g0563 592 ProSiteProfiles MI domain profile. 426 548 IPR003891 -
Hepe09g0563 592 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 15 590 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Hepe09g0563 592 Gene3D - 14 249 - -
Hepe09g0563 592 SMART ma3_7 427 539 IPR003891 -
Hepe09g0563 592 SMART if4_15 11 236 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Hepe09g0563 592 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1954 Hepe-Chr1:84366032 Hepe09g0563 Hepe-Chr9:5301871 1.25e-250 dispersed
Hepe03g0406 Hepe-Chr3:5877424 Hepe09g0563 Hepe-Chr9:5301871 2.19e-52 dispersed
Hepe05g1800 Hepe-Chr5:68256718 Hepe09g0563 Hepe-Chr9:5301871 2.95e-55 dispersed
Hepe07g2167 Hepe-Chr7:65907114 Hepe09g0563 Hepe-Chr9:5301871 1.07e-07 dispersed
Hepe09g0563 Hepe-Chr9:5301871 Hepe09g0565 Hepe-Chr9:5309990 1.68e-103 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0563 K03260 - csv:101207520 965.296