Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0582 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCGGATGGGCTTCTCGAGATCTGTGAAAGCGTTTATGTTTTTGATTGCTGTTTTACCACGGATGCTTGGAAGGAAGAGAATTATGAACTTTACTTAGGTGGAATAGTTGGTCAACTCCGAGAACATTTAACAGACGCATCGTTCTTGGTATTCAATTTTAGGAAATTAGAGCTGCAAAGTCAGATGGGCGAAATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACAATGGAAGTGATTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCGCTTGGGCAGAATAATGTTTTGTTAATGCACTGTGAACGTGGTGGTTGGCCAGTTTTGGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAGCAAAGGACATTGGACATGGTTTATAGGCAGGCACCTCGGGAGCTTTTGCATTTTTTGTGTCCTATGAATCCAATTCCTTCTCAATTAAGGTACCTGCAATATGTCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGCCCAATATTTCGAATATATGGACAAGATCCTCTGCTTGTCAGTGATCGAACTCCCAAAGTTCTGTATTCAACTCCGAAAAAAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTTTTTGAGTGCATCACCTTGCATGACGACATGGAATCTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAATCGTGAAGAGATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGAATTTCGAGCAGAGGTTCTTTTCTCTGAGATGGATGCTGGAACTACTACTGTTGAAAATGATGTACTTTGCTTTGATGAGGAAGGTCTCCCGATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGACGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACAGTCCTACGTGGAGTACACAAGTTAGTCCTTTATTCCCAAGTCCTAGAAAATTTCCGCAGAAGTTCACATTGGAGAACAGAACTAAAATCCTAGAGAAGGAAGAATCTAGTCCAACATCTTTTTCCCGGTCATACCCATTTGCCTATGAAATGTTCCAAGATTCACCAAATTCAGCGAGAAGTGATAGGTCCTCATTCAGTGCTTCTGAAGGAGAATCAGAGGTTTTTCATCTGAAAACTGCATCTTCATCTTCTCCGAATGCAGCATTGGCTGTTTCTCTTGCACGTGCACCTGAATCTCTTCAGACTAAAAGTTTCCTTACAGAAACAACAATACCACCACCTCCTCCTCTCCCACAACTTTCCACGAATATTTCTGCTCCTAATTCTCTACCTTATCCTCCCCCTCCTCCAACTGCATCACCATTTCCGTCTAGTAACTTTTCAACTCTAAGACCAGATAAATCTTCACCTACGGAGGAAATAGAAAACTATTCAAAGGATCAAAGTCAGTTATCAACCATTAGTTCCTCAATACAGTCTTCTCCTCCACCTCCTCCCCCACCTCCCTCCACACCTCCTTTGAAGGATACCATAGCAGTTAGAGTTAACGATTCTCCTCCACCACCCCCTCCTTTTCCTTCAACATTAGCTTCCCATCCTCCAATTGCATCCTCAGTTCCTCAATCACCACCACCTCCTCCTCTAGCATCCATTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCACCACCACCACCTCCCCCTTCAATGGCCATTACAGATCCTAAAATTTCCTCTCCAGTGCCTCTACCACCACCACCACCACATCTTCCTATGACGTCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTTCTCCCCCACCACCACCACCTCCTCCTATGACGTCCAGGCAGGCTGGAGGTACTTCAACATCTTCGACTGTTCCTCCCCCACCACCACCTCTTCCGTCTAGACAGGTTGGAAGTACTTCAATATCTCCATCTGTTCCTCCTCCTCCACCACCACCTGCTTCAACCACCGGCTCTCCCTCACATGTTCCTTGTGCTCCCCCTCCTCCTGCCCTTTCTGGGAGAGGGGCTTCAAAATCTGGTGAGTTGCCTGGTTCCTCTAGGTCTTCCTTTCCAGCGCCACCAAGTATTTGTCCACCTAGTATGAAGGGACGAAGTTTGTCACGGACTATAAGTTCAAGAACACATATAACCAAGAAACTCAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCACAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTTCTCCTGATCAGCACAACAAGTTAAGTGGGCGCGGTCCAGGTGGGAATAAACCCGAGAAAGTGCAACTGATTGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTATGCATGAATTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCGCTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCAACAAAGGAGGAAATGGATTTACTCAAGGGCTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAATCTAAACTTAGAGTTTTCTCATTCAAGATACAGTTCAGCTCTCAGGTCACTGACCTCAAAAAAAGCCTGAACTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTCAAGTTTAAGAGAGTCATGCAGACAATACTATCTCTAGGAAATGCTTTGAACCAGGGAACAGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACGGACACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTCTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCGGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCGCTATATCCAATAATTTCCGAATGGTTTTAAAGGATTTCCTTCGGTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTCTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGTCCCTTTGAACAAGTTATGGCAACCTTATGCAACTTTGTGAGCATGTTCAACCGAGCCCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACTGAAGGCGAAAAATCGAAGACGCCGGGGCGCATGCATAAAAAGAAGAAAACGAAACAATTATCACCCTCCCCGATCGAGATTGGCAATGTCAAGTAA 3687 43.4 MALLRKLFFRKPPDGLLEICESVYVFDCCFTTDAWKEENYELYLGGIVGQLREHLTDASFLVFNFRKLELQSQMGEILSKYDMTIMDYPQQYEGCPVLTMEVIHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFLCPMNPIPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKKSKNIRTYKQAESELVKIDVNCHIQGDVVFECITLHDDMESEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKEFRAEVLFSEMDAGTTTVENDVLCFDEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDSPTWSTQVSPLFPSPRKFPQKFTLENRTKILEKEESSPTSFSRSYPFAYEMFQDSPNSARSDRSSFSASEGESEVFHLKTASSSSPNAALAVSLARAPESLQTKSFLTETTIPPPPPLPQLSTNISAPNSLPYPPPPPTASPFPSSNFSTLRPDKSSPTEEIENYSKDQSQLSTISSSIQSSPPPPPPPPSTPPLKDTIAVRVNDSPPPPPPFPSTLASHPPIASSVPQSPPPPPLASIVNRKISSPIPSPPPPPPPSMAITDPKISSPVPLPPPPPHLPMTSKQVESTSTSPFVSPPPPPPPPMTSRQAGGTSTSSTVPPPPPPLPSRQVGSTSISPSVPPPPPPPASTTGSPSHVPCAPPPPALSGRGASKSGELPGSSRSSFPAPPSICPPSMKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPSPDQHNKLSGRGPGGNKPEKVQLIDHRRAYNCEIMLSKVKVPMHELMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFSSQVTDLKKSLNFVNSAAEEIKSSVKFKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGAISNNFRMVLKDFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMATLCNFVSMFNRAHEENCKQIELEMKKATEGEKSKTPGRMHKKKKTKQLSPSPIEIGNVK 1228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5428963 5445100 + Hsped.09g05820.1 Hepe09g0582 579266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0582 1228 Gene3D - 200 340 - -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 580 595 - -
Hepe09g0582 1228 SMART it6_source 805 1228 IPR015425 -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 860 879 - -
Hepe09g0582 1228 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 507 804 - -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 563 579 - -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 693 707 - -
Hepe09g0582 1228 Coils Coil 1179 1199 - -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 1196 1228 - -
Hepe09g0582 1228 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Hepe09g0582 1228 ProSiteProfiles Formin homology-2 (FH2) domain profile. 805 1204 IPR015425 -
Hepe09g0582 1228 Pfam Formin Homology 2 Domain 812 1179 IPR015425 -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 737 765 - -
Hepe09g0582 1228 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Hepe09g0582 1228 Gene3D Formin, FH2 domain 804 1189 IPR042201 -
Hepe09g0582 1228 PANTHER FORMIN-J 1 1202 IPR051144 -
Hepe09g0582 1228 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 604 618 - -
Hepe09g0582 1228 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 186 IPR029021 -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 646 681 - -
Hepe09g0582 1228 SMART PTEN_C2_2 197 337 IPR014020 -
Hepe09g0582 1228 MobiDBLite consensus disorder prediction 529 543 - -
Hepe09g0582 1228 SUPERFAMILY Formin homology 2 domain (FH2 domain) 742 1195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0582 K28090 - - csv:101221713 1778.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1968 Hepe-Chr1:84453021 Hepe09g0582 Hepe-Chr9:5428963 0.0 dispersed
Hepe06g1825 Hepe-Chr6:69318397 Hepe09g0582 Hepe-Chr9:5428963 2.33e-285 dispersed
Hepe08g1059 Hepe-Chr8:10221214 Hepe09g0582 Hepe-Chr9:5428963 5.41e-107 dispersed
Hepe09g0095 Hepe-Chr9:754604 Hepe09g0582 Hepe-Chr9:5428963 6.87e-234 dispersed
Hepe09g0582 Hepe-Chr9:5428963 Hepe07g2489 Hepe-Chr7:69234715 2.46e-280 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe01g0559 . 79 386 Protein tyrosine phosphatase (PTP) family AT1G71860 66.5 6.6e-120 427.6
Hepe09g0013 . 1 864 Protein tyrosine phosphatase (PTP) family AT5G23720 62.8 5.1e-300 1027.3
Hepe03g0164 . 97 236 Protein tyrosine phosphatase (PTP) family AT3G06110 51.1 1.2e-37 153.3
Hepe02g0068 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 3.0e-71 265.0
Hepe01g1069 . 92 372 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.1e-112 403.3
Hepe01g0659 . 4 278 Protein tyrosine phosphatase (PTP) family AT3G10940 65.8 5.3e-107 384.4
Hepe02g1823 . 14 462 Protein tyrosine phosphatase (PTP) family AT3G01510 73.7 1.9e-204 708.8
Hepe08g0587 . 10 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 7.0e-74 274.2
Hepe02g0073 . 6 233 Protein tyrosine phosphatase (PTP) family AT2G32960 59.6 3.0e-72 268.9
Hepe09g1309 . 14 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.8 4.4e-52 201.8
Hepe06g1113 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 6.1e-102 367.9
Hepe08g2635 . 10 229 Protein tyrosine phosphatase (PTP) family AT2G35680 60.1 1.9e-79 293.1
Hepe08g2635 . 27 216 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 7.7e-46 180.6
Hepe08g0587 . 43 211 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 3.4e-76 281.6
Hepe02g0073 . 36 234 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.1e-69 260.0
Hepe09g1309 . 12 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.7 6.7e-56 214.2
Hepe09g1309 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 7.5e-79 290.4
Hepe08g0587 . 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 59.9 7.5e-55 210.7
Hepe01g0838 . 1 184 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 2.2e-62 237.7
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G19420 63.4 1.4e-216 749.6
Hepe04g1268 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 61.7 5.7e-199 691.0
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe08g0239 . 62 244 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.7e-67 253.1
Hepe06g1037 . 23 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.3 2.3e-108 389.0
Hepe04g0778 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 69.0 6.1e-279 956.8
Hepe04g0778 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.1e-253 872.8
Hepe04g0778 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 55.5 1.4e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33