Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0587 ATGAAACAGGAATGGCCTAGTACAATTTCAAAAACCAGGGTGAATGTAATTGCAGAAGGTTCAGATTCAAGCTGCATCAGTTGCCCATTCCCTGCAAATGGATGCAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCCAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAACGAAGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAATTTTCCTTGGACCAAATTCACAATTGAAGAGCCGAACTTTCAGAATCTTTACACTACAGAAACTTTGCTTAATATGTTAAAGGACGGTTCTTACAGAACCAAATTTGCTGAGTATTTGAGGGATCGTTCTGAAAATGCACAAACATCAGCCGGTCAATCTGCAGCAAAGATGCATAACAATGAAGGGACATCTATTAAGCAACTTTTTCAAAAAGAGCTAACACCTAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATATTTCCCACATATATCAGCTAGCACAATAGAAAATGGGGAACATGTTGATGATGATCGCGATGTTCAGCTAGTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTTACGCGAGGATGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGGGAAGCGATGCTAAAACTACATTTTGTGTGGTGGATGTTAAAGACCGTAACAATGGTGACAGCACGGTTGAGAACGAAATGACGAGTAGTGAAATGCAGCTAGATTTGGGACATGAAGAAGTCGAGGAATTGGTATCGCCTAAGCACGTAGATGATAAACTAAAAGATGATGCTGAAGTGAAGGGCTTCAAGCTGTTTGGAGTGCATATTAAGTGA 1020 40.39 MKQEWPSTISKTRVNVIAEGSDSSCISCPFPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQNLYTTETLLNMLKDGSYRTKFAEYLRDRSENAQTSAGQSAAKMHNNEGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASTIENGEHVDDDRDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKGSDAKTTFCVVDVKDRNNGDSTVENEMTSSEMQLDLGHEEVEELVSPKHVDDKLKDDAEVKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5520619 5521638 - Hsped.09g05870.1 Hepe09g0587 579271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0587 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0587 339 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Hepe09g0587 339 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Hepe09g0587 339 Gene3D - 162 293 IPR015300 -
Hepe09g0587 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0587 339 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677(InterPro)
Hepe09g0587 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Hepe09g0587 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 265 IPR015300 -
Hepe09g0587 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Hepe09g0587 339 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0587 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 337 IPR044800 GO:0003700(InterPro)
Hepe09g0587 339 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0587 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0587 K09287 - - csv:101212246 601.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1220 Hepe-Chr1:77380913 Hepe09g0587 Hepe-Chr9:5520619 4.32e-54 dispersed
Hepe09g0587 Hepe-Chr9:5520619 Hepe09g1063 Hepe-Chr9:11362082 4.12e-103 dispersed
Hepe09g0587 Hepe-Chr9:5520619 Hepe02g2727 Hepe-Chr2:75605957 2.43e-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g0407 . 1 154 RAV Transcription Factor Family AT2G36080 61.0 2.9e-47 185.3
Hepe03g0743 . 88 200 RAV Transcription Factor Family AT2G36080 69.8 1.3e-42 169.9
Hepe07g0751 . 39 153 RAV Transcription Factor Family AT2G36080 69.5 1.1e-41 166.8
Hepe06g1411 . 49 158 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Hepe01g1220 . 179 291 RAV Transcription Factor Family AT2G36080 65.8 2.1e-37 152.5
Hepe06g1411 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 1.2e-56 217.2
Hepe03g0743 . 88 339 RAV Transcription Factor Family AT2G46870 52.5 7.5e-54 208.0
Hepe07g0751 . 44 154 RAV Transcription Factor Family AT2G46870 87.5 9.7e-54 207.6
Hepe01g1220 . 175 287 RAV Transcription Factor Family AT2G46870 67.2 1.2e-38 157.5
Hepe02g2727 . 157 262 RAV Transcription Factor Family AT2G46870 68.8 4.9e-37 152.1
Hepe05g0407 . 37 154 RAV Transcription Factor Family AT3G11580 76.3 1.8e-44 176.4
Hepe03g0743 . 88 200 RAV Transcription Factor Family AT3G11580 63.7 1.6e-40 163.3
Hepe07g0751 . 38 153 RAV Transcription Factor Family AT3G11580 61.4 2.9e-39 159.1
Hepe06g1411 . 49 160 RAV Transcription Factor Family AT3G11580 61.8 8.6e-39 157.5
Hepe03g0743 . 89 232 RAV Transcription Factor Family AT3G61970 71.4 1.6e-53 206.8
Hepe06g1411 . 29 165 RAV Transcription Factor Family AT3G61970 73.6 3.6e-53 205.7
Hepe01g1220 . 179 287 RAV Transcription Factor Family AT3G61970 69.1 8.5e-39 157.9
Hepe02g2727 . 145 262 RAV Transcription Factor Family AT3G61970 64.4 1.0e-36 151.0
Hepe06g1411 . 50 165 RAV Transcription Factor Family AT4G01500 68.3 3.2e-42 169.5
Hepe03g0743 . 91 199 RAV Transcription Factor Family AT4G01500 67.8 2.0e-41 166.8
Hepe07g0751 . 45 153 RAV Transcription Factor Family AT4G01500 66.4 9.5e-39 157.9
Hepe05g0407 . 37 231 RAV Transcription Factor Family AT5G06250 53.2 1.8e-48 189.9
Hepe07g0751 . 45 153 RAV Transcription Factor Family AT5G06250 69.7 2.1e-41 166.4
Hepe03g0743 . 91 197 RAV Transcription Factor Family AT5G06250 66.7 1.1e-40 164.1
Hepe06g1411 . 50 158 RAV Transcription Factor Family AT5G06250 64.7 2.6e-39 159.5
Hepe09g0587 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 8.6e-88 320.9
Hepe09g1063 . 46 354 RAV Transcription Factor Family AT1G50680 50.5 4.3e-79 292.0
Hepe09g0587 . 41 339 RAV Transcription Factor Family AT1G51120 52.4 1.6e-84 310.1
Hepe09g1063 . 52 279 RAV Transcription Factor Family AT1G51120 61.4 4.9e-78 288.5
Hepe01g1220 . 24 338 RAV Transcription Factor Family AT1G13260 65.7 1.3e-104 376.7
Hepe02g2727 . 30 304 RAV Transcription Factor Family AT1G13260 63.9 4.2e-90 328.6
Hepe03g0743 . 92 197 RAV Transcription Factor Family AT1G13260 70.1 8.3e-38 154.8
Hepe06g1411 . 51 158 RAV Transcription Factor Family AT1G13260 71.6 1.1e-37 154.5
Hepe07g0751 . 42 153 RAV Transcription Factor Family AT1G13260 67.3 1.2e-36 151.0
Hepe01g1220 . 17 305 RAV Transcription Factor Family AT3G25730 66.1 1.6e-99 359.8
Hepe02g2727 . 30 305 RAV Transcription Factor Family AT3G25730 61.5 6.5e-88 321.2
Hepe05g0407 . 21 154 RAV Transcription Factor Family AT3G25730 56.7 1.2e-36 151.0
Hepe01g1220 . 1 339 RAV Transcription Factor Family AT1G68840 60.7 3.7e-110 395.2
Hepe02g2727 . 21 308 RAV Transcription Factor Family AT1G68840 59.2 2.5e-90 329.3
Hepe03g0743 . 91 202 RAV Transcription Factor Family AT1G68840 68.4 2.0e-39 160.2
Hepe06g1411 . 50 158 RAV Transcription Factor Family AT1G68840 70.3 2.2e-38 156.8
Hepe07g0751 . 38 153 RAV Transcription Factor Family AT1G68840 64.4 1.1e-37 154.5
Hepe01g1220 . 17 305 RAV Transcription Factor Family AT3G25730 66.1 1.6e-99 359.8
Hepe02g2727 . 30 305 RAV Transcription Factor Family AT3G25730 61.5 6.5e-88 321.2
Hepe05g0407 . 21 154 RAV Transcription Factor Family AT3G25730 56.7 1.2e-36 151.0
Hepe09g0587 . 41 339 RAV Transcription Factor Family AT1G51120 52.4 1.6e-84 310.1
Hepe09g1063 . 52 279 RAV Transcription Factor Family AT1G51120 61.4 4.9e-78 288.5
Hepe05g0407 . 37 154 RAV Transcription Factor Family AT3G11580 76.3 1.8e-44 176.4
Hepe03g0743 . 88 200 RAV Transcription Factor Family AT3G11580 63.7 1.6e-40 163.3
Hepe07g0751 . 38 153 RAV Transcription Factor Family AT3G11580 61.4 2.9e-39 159.1
Hepe06g1411 . 49 160 RAV Transcription Factor Family AT3G11580 61.8 8.6e-39 157.5
Hepe06g1411 . 50 165 RAV Transcription Factor Family AT4G01500 68.3 3.2e-42 169.5
Hepe03g0743 . 91 199 RAV Transcription Factor Family AT4G01500 67.8 2.0e-41 166.8
Hepe07g0751 . 45 153 RAV Transcription Factor Family AT4G01500 66.4 9.5e-39 157.9
Hepe05g0407 . 1 154 RAV Transcription Factor Family AT2G36080 61.0 2.9e-47 185.3
Hepe03g0743 . 88 200 RAV Transcription Factor Family AT2G36080 69.8 1.3e-42 169.9
Hepe07g0751 . 39 153 RAV Transcription Factor Family AT2G36080 69.5 1.1e-41 166.8
Hepe06g1411 . 49 158 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Hepe01g1220 . 179 291 RAV Transcription Factor Family AT2G36080 65.8 2.1e-37 152.5
Hepe05g0407 . 37 231 RAV Transcription Factor Family AT5G06250 53.2 1.8e-48 189.9
Hepe07g0751 . 45 153 RAV Transcription Factor Family AT5G06250 69.7 2.1e-41 166.4
Hepe03g0743 . 91 197 RAV Transcription Factor Family AT5G06250 66.7 1.1e-40 164.1
Hepe06g1411 . 50 158 RAV Transcription Factor Family AT5G06250 64.7 2.6e-39 159.5
Hepe06g1411 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 1.2e-56 217.2
Hepe03g0743 . 88 339 RAV Transcription Factor Family AT2G46870 52.5 7.5e-54 208.0
Hepe07g0751 . 44 154 RAV Transcription Factor Family AT2G46870 87.5 9.7e-54 207.6
Hepe01g1220 . 175 287 RAV Transcription Factor Family AT2G46870 67.2 1.2e-38 157.5
Hepe02g2727 . 157 262 RAV Transcription Factor Family AT2G46870 68.8 4.9e-37 152.1
Hepe09g0587 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 8.6e-88 320.9
Hepe09g1063 . 46 354 RAV Transcription Factor Family AT1G50680 50.5 4.3e-79 292.0
Hepe03g0743 . 89 232 RAV Transcription Factor Family AT3G61970 71.4 1.6e-53 206.8
Hepe06g1411 . 29 165 RAV Transcription Factor Family AT3G61970 73.6 3.6e-53 205.7
Hepe01g1220 . 179 287 RAV Transcription Factor Family AT3G61970 69.1 8.5e-39 157.9
Hepe02g2727 . 145 262 RAV Transcription Factor Family AT3G61970 64.4 1.0e-36 151.0
Hepe01g1220 . 24 338 RAV Transcription Factor Family AT1G13260 65.7 1.3e-104 376.7
Hepe02g2727 . 30 304 RAV Transcription Factor Family AT1G13260 63.9 4.2e-90 328.6
Hepe03g0743 . 92 197 RAV Transcription Factor Family AT1G13260 70.1 8.3e-38 154.8
Hepe06g1411 . 51 158 RAV Transcription Factor Family AT1G13260 71.6 1.1e-37 154.5
Hepe07g0751 . 42 153 RAV Transcription Factor Family AT1G13260 67.3 1.2e-36 151.0
Hepe01g1220 . 1 339 RAV Transcription Factor Family AT1G68840 60.7 3.7e-110 395.2
Hepe02g2727 . 21 308 RAV Transcription Factor Family AT1G68840 59.2 2.5e-90 329.3
Hepe03g0743 . 91 202 RAV Transcription Factor Family AT1G68840 68.4 2.0e-39 160.2
Hepe06g1411 . 50 158 RAV Transcription Factor Family AT1G68840 70.3 2.2e-38 156.8
Hepe07g0751 . 38 153 RAV Transcription Factor Family AT1G68840 64.4 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56363 PF02362 B3 1.70E-24 CL0405 Hepe TF