Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0587 ATGAAACAGGAATGGCCTAGTACAATTTCAAAAACCAGGGTGAATGTAATTGCAGAAGGTTCAGATTCAAGCTGCATCAGTTGCCCATTCCCTGCAAATGGATGCAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCCAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAACGAAGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAATTTTCCTTGGACCAAATTCACAATTGAAGAGCCGAACTTTCAGAATCTTTACACTACAGAAACTTTGCTTAATATGTTAAAGGACGGTTCTTACAGAACCAAATTTGCTGAGTATTTGAGGGATCGTTCTGAAAATGCACAAACATCAGCCGGTCAATCTGCAGCAAAGATGCATAACAATGAAGGGACATCTATTAAGCAACTTTTTCAAAAAGAGCTAACACCTAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATATTTCCCACATATATCAGCTAGCACAATAGAAAATGGGGAACATGTTGATGATGATCGCGATGTTCAGCTAGTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTTACGCGAGGATGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGGGAAGCGATGCTAAAACTACATTTTGTGTGGTGGATGTTAAAGACCGTAACAATGGTGACAGCACGGTTGAGAACGAAATGACGAGTAGTGAAATGCAGCTAGATTTGGGACATGAAGAAGTCGAGGAATTGGTATCGCCTAAGCACGTAGATGATAAACTAAAAGATGATGCTGAAGTGAAGGGCTTCAAGCTGTTTGGAGTGCATATTAAGTGA 1020 40.39 MKQEWPSTISKTRVNVIAEGSDSSCISCPFPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQNLYTTETLLNMLKDGSYRTKFAEYLRDRSENAQTSAGQSAAKMHNNEGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASTIENGEHVDDDRDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKGSDAKTTFCVVDVKDRNNGDSTVENEMTSSEMQLDLGHEEVEELVSPKHVDDKLKDDAEVKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5520619 5521638 - Hsped.09g05870.1 Hepe09g0587 579271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0587 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0587 339 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Hepe09g0587 339 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Hepe09g0587 339 Gene3D - 162 293 IPR015300 -
Hepe09g0587 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0587 339 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677(InterPro)
Hepe09g0587 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Hepe09g0587 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 265 IPR015300 -
Hepe09g0587 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Hepe09g0587 339 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0587 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 337 IPR044800 GO:0003700(InterPro)
Hepe09g0587 339 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0587 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1220 Hepe-Chr1:77380913 Hepe09g0587 Hepe-Chr9:5520619 4.32e-54 dispersed
Hepe09g0587 Hepe-Chr9:5520619 Hepe09g1063 Hepe-Chr9:11362082 4.12e-103 dispersed
Hepe09g0587 Hepe-Chr9:5520619 Hepe02g2727 Hepe-Chr2:75605957 2.43e-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56363 PF02362 B3 1.70E-24 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0587 K09287 - csv:101212246 601.282