Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0669 ATGTCGACCTGCATCGATATCGCACCCGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCAGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTGTACAGTTCTAGTGGAGCTGATCATTTTCAGGCTGATTTTGGATCATCATCATCCAAATTGTGTAACAATAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGTAGAGGAAAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCAAATAATCCTGAGATTAGCCATAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGTAAGTACTTTAATTATTTACTTTTTAATTAAGAAAACACTTAAATTTTGCTATATATTTGATGAAATTTATTCAAACTAA 618 39.0 MSTCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYSSSGADHFQADFGSSSSKLCNNNKMEIRAPTTIAVEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDVSTLIIYFLIKKTLKFCYIFDEIYSN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6330487 6334172 + Hsped.09g06690.1 Hepe09g0669 579353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0669 205 Gene3D High mobility group box domain 108 162 IPR036910 -
Hepe09g0669 205 PANTHER PROTEIN YABBY 6-RELATED 9 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Hepe09g0669 205 FunFam axial regulator YABBY 5-like 105 163 - -
Hepe09g0669 205 CDD HMG-box_SF 121 157 - -
Hepe09g0669 205 SUPERFAMILY HMG-box 109 160 IPR036910 -
Hepe09g0669 205 Pfam YABBY protein 8 167 IPR006780 GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0186 Hepe-Chr8:1664329 Hepe09g0669 Hepe-Chr9:6330487 4.40e-57 dispersed
Hepe09g0669 Hepe-Chr9:6330487 Hepe10g1628 Hepe-Chr10:53009522 5.99e-38 dispersed
Hepe08g2532 Hepe-Chr8:66885807 Hepe09g0669 Hepe-Chr9:6330487 7.87e-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56367 PF04690 YABBY 2.80E-70 CL0114 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0669 K25796 - csv:101215951 330.102