Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe09g0669 | ATGTCGACCTGCATCGATATCGCACCCGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCAGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTGTACAGTTCTAGTGGAGCTGATCATTTTCAGGCTGATTTTGGATCATCATCATCCAAATTGTGTAACAATAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGTAGAGGAAAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCAAATAATCCTGAGATTAGCCATAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGTAAGTACTTTAATTATTTACTTTTTAATTAAGAAAACACTTAAATTTTGCTATATATTTGATGAAATTTATTCAAACTAA | 618 | 39.0 | MSTCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYSSSGADHFQADFGSSSSKLCNNNKMEIRAPTTIAVEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDVSTLIIYFLIKKTLKFCYIFDEIYSN | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6330487 | 6334172 | + | Hsped.09g06690.1 | Hepe09g0669 | 579353 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe09g0669 | 205 | Gene3D | High mobility group box domain | 108 | 162 | IPR036910 | - | |
Hepe09g0669 | 205 | PANTHER | PROTEIN YABBY 6-RELATED | 9 | 175 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Hepe09g0669 | 205 | FunFam | axial regulator YABBY 5-like | 105 | 163 | - | - | |
Hepe09g0669 | 205 | CDD | HMG-box_SF | 121 | 157 | - | - | |
Hepe09g0669 | 205 | SUPERFAMILY | HMG-box | 109 | 160 | IPR036910 | - | |
Hepe09g0669 | 205 | Pfam | YABBY protein | 8 | 167 | IPR006780 | GO:0007275(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe08g0186 | Hepe-Chr8:1664329 | Hepe09g0669 | Hepe-Chr9:6330487 | 4.40e-57 | dispersed | |
Hepe09g0669 | Hepe-Chr9:6330487 | Hepe10g1628 | Hepe-Chr10:53009522 | 5.99e-38 | dispersed | |
Hepe08g2532 | Hepe-Chr8:66885807 | Hepe09g0669 | Hepe-Chr9:6330487 | 7.87e-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56367 | PF04690 | YABBY | 2.80E-70 | CL0114 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe09g0669 | K25796 | - | csv:101215951 | 330.102 |