Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0678 ATGCCTAAGTTTAGAGGTGTTCGGCAGCGCCATTGGGGCTCTTGGGTTTCCGAAATTCGACACCCTTTATTGAAGAGGAGGATATGGTTGGGGACGTTCGAGACGGCGGAGGAAGCGGCGAGAGCGTACGATCAAGCAGCGATTTTGATGAGCGGTCGAAATGCCAAAACCAATTTCCCTACAACCCAAGCTAGCAATGGAGACACCAACATTATTACAACCACCAAGGATTCACCAAAGGGTTTGTCTGAAATTTTACGTGCCAAGCTCAAGAAATGCTGCCGCACTCCGTCGCCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAACATCGGTGTGTGGCAGAAGCGTGCCGGGCAGCGGTCGGCATCCAACTGGGTGATGACCGTTGAGCTCGGAAACAAGAAGAGCCTGATGGCGGATGTGGTTGCTTCCGATGAGTCTCTAGTGGTGGCGGAAGTGGCGGAGATTCGATCGGAGTTAGATGAAGAAGAGAGAATGTTGGCATTGCAAATGGTGGAGGAACTGCTTCACATCAACTATGATCCCACGGAGCCGTTTGAGATTCAACAAGGAAATCATATTAATGATCTTGAGTAG 606 50.66 MPKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAKTNFPTTQASNGDTNIITTTKDSPKGLSEILRAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQRSASNWVMTVELGNKKSLMADVVASDESLVVAEVAEIRSELDEEERMLALQMVEELLHINYDPTEPFEIQQGNHINDLE 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6424384 6425297 + Hsped.09g06780.1 Hepe09g0678 579362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0678 201 Gene3D AP2/ERF domain 3 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0678 201 FunFam Ethylene-responsive transcription factor 2 3 61 - -
Hepe09g0678 201 CDD AP2 2 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0678 201 ProSiteProfiles AP2/ERF domain profile. 3 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0678 201 Pfam AP2 domain 2 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0678 201 SMART rav1_2 3 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0678 201 SUPERFAMILY DNA-binding domain 3 61 IPR016177 GO:0003677(InterPro)
Hepe09g0678 201 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 131 IPR050913 -
Hepe09g0678 201 PRINTS Ethylene responsive element binding protein signature 26 42 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0678 201 PRINTS Ethylene responsive element binding protein signature 4 15 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0678 Hepe-Chr9:6424384 Hepe10g0226 Hepe-Chr10:2400040 1.23e-29 dispersed
Hepe01g2025 Hepe-Chr1:84978406 Hepe09g0678 Hepe-Chr9:6424384 2.33e-71 wgd
Hepe02g1370 Hepe-Chr2:17426347 Hepe09g0678 Hepe-Chr9:6424384 2.17e-57 wgd
Hepe08g2535 Hepe-Chr8:66945677 Hepe09g0678 Hepe-Chr9:6424384 3.52e-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56368 PF00847 AP2 4.00E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0678 - - - 0.0