Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0773 ATGGATAATTTATCCCCGCCGAATGCTCAAACTGATAGTGCGGAACCGGGTAATGTGAATTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGCTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTGAATCACCGGCTGTGATGGTGGTGCCGAGTCAGTCGCAACCGAAGTCTCCACAACATTTGATGGTTTTGCCCATTGGAACACAATCGCCTCATCCTGTGAGAAAGCCAGATTCTCCGAAGTCAAGATCAAGGTCTAATGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGCTTCCAGGAGAGAAGCCGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCTAAAATTGCTAGCAGCCCACATGGAACACGAGAGAGCAGGGATGAGATTGGGGAGGTAGTAATGCTGGCAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGTGATCATGTCAACAACATGACTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTGTTGGATCCTCTGGTTATGCTTGCTTTCCCATTTCAAAGAAAAGAAAAGGCCCGGAGCTATGCTTTGGCCCTTCAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATATAATGTCTTCTGGCACGTCTACATCATCTCCCCTCCCTGTTGCTCATCTTGGCAGCCCTGCAGCACCAGGGCCTTCAAAGTTTTCATTCAGGTCCTTATTAGCAGACCTCATCCAGCCACACGACTTTAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGTGAAGCTGCCAAAAACGTAGCAGAACAAAGAATTGCTGAGAAGCAGATAAATGATCCACTTCAGATTTCCCGTGCTTCATCAACTGGAGATAGGTCACAGCATCAGAAGGCAGATGAGAAAGCTGCAGATGGTGAGCGTGGAAGTTCAAACCAAGGTGATAGAACTGTACATGATAATTCCAATTCAGATAGTTCGGAGATGACAGGAGCAAGGCCAATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACGAGATACTATGTTCATGGGAGCTGCTCCAGCAGATGGGTTGGCGGCAGGCCATGGTTGCAACACATCGTCACATGCCCCTGAGAAGTCTGTGTCAGAAGTGTACATAGAGCAGGAACGAATCGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAGATAAGAGAAACAAAATTCACTTCTAGAAGCGAAGTGAGGAATGAAAATCACAGCAACAATTTCACCTCAAGTAGTGGATGCCAACATAGAACTATTAACAATGGGGTCGGAAAGAATGTCGCTCTCTCGGCACCCAGAATACCGTCAACCGGTACTGCAGCTCGTCATCCTGGTAACGATCTACTACCCAAAATCCTACCCCTTCCTGAAAATGGGAAGAGTAAACCAAAAAGTTGA 1737 45.02 MDNLSPPNAQTDSAEPGNVNSSDVPAKKLARQLDFTGLGGAVLPEHPHFQSESPAVMVVPSQSQPKSPQHLMVLPIGTQSPHPVRKPDSPKSRSRSNVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGEVVMLAKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVNNMTYIQQAANAAITGAVGSSGYACFPISKKRKGPELCFGPSGKDSPLNSIPQFHQANNIMSSGTSTSSPLPVAHLGSPAAPGPSKFSFRSLLADLIQPHDFKELCSVLVVLSSEAAKNVAEQRIAEKQINDPLQISRASSTGDRSQHQKADEKAADGERGSSNQGDRTVHDNSNSDSSEMTGARPMSPGTLALMCDERDTMFMGAAPADGLAAGHGCNTSSHAPEKSVSEVYIEQERIVLTKFRDCLNKLITLGEIRETKFTSRSEVRNENHSNNFTSSSGCQHRTINNGVGKNVALSAPRIPSTGTAARHPGNDLLPKILPLPENGKSKPKS 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7455974 7462133 - Hsped.09g07730.1 Hepe09g0773 579457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0773 578 MobiDBLite consensus disorder prediction 389 410 - -
Hepe09g0773 578 PANTHER TESMIN/TSO1-RELATED 48 506 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Hepe09g0773 578 MobiDBLite consensus disorder prediction 55 69 - -
Hepe09g0773 578 MobiDBLite consensus disorder prediction 411 429 - -
Hepe09g0773 578 MobiDBLite consensus disorder prediction 375 435 - -
Hepe09g0773 578 MobiDBLite consensus disorder prediction 513 538 - -
Hepe09g0773 578 ProSiteProfiles CRC domain profile. 107 231 IPR005172 -
Hepe09g0773 578 MobiDBLite consensus disorder prediction 1 106 - -
Hepe09g0773 578 MobiDBLite consensus disorder prediction 303 317 - -
Hepe09g0773 578 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 108 143 IPR005172 -
Hepe09g0773 578 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 194 228 IPR005172 -
Hepe09g0773 578 MobiDBLite consensus disorder prediction 1 20 - -
Hepe09g0773 578 MobiDBLite consensus disorder prediction 303 324 - -
Hepe09g0773 578 MobiDBLite consensus disorder prediction 511 578 - -
Hepe09g0773 578 SMART CXC_2 106 146 IPR033467 -
Hepe09g0773 578 SMART CXC_2 191 232 IPR033467 -
Hepe09g0773 578 MobiDBLite consensus disorder prediction 86 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0773 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0214 Hepe-Chr3:2713157 Hepe09g0773 Hepe-Chr9:7455974 1.57e-34 transposed
Hepe05g1577 Hepe-Chr5:65356360 Hepe09g0773 Hepe-Chr9:7455974 6.20e-31 transposed
Hepe10g0268 Hepe-Chr10:2771816 Hepe09g0773 Hepe-Chr9:7455974 2.62e-16 transposed
Hepe08g2601 Hepe-Chr8:67850044 Hepe09g0773 Hepe-Chr9:7455974 2.88e-206 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g2601 . 90 563 CPP Transcription Factor Family AT2G20110 58.0 1.7e-141 500.0
Hepe09g0773 . 26 504 CPP Transcription Factor Family AT2G20110 51.4 3.4e-126 449.1
Hepe08g2601 . 93 526 CPP Transcription Factor Family AT4G29000 63.7 8.3e-150 527.7
Hepe09g0773 . 25 508 CPP Transcription Factor Family AT4G29000 55.9 6.1e-145 511.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56375 PF03638 TCR 3.10E-12 No_clan Hepe TF