Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0787 ATGATCCCGCTAAGTTTGATTGCTTTTTGCCTCTTTTCTGTGTTCTTTTATGTTGAAGCTCAAGCGGTTTCTCAAGAGGCTGAAAACAGTGCTTTTCAGCCGAGCCTTGGCTTTGTGATAGGGATTTTGGGAGTTATGTTTTTGTTGACATTTATTCTCCTTGTCTATGCAAAGTTCTGTCATAGAAGATCTTCTTCTGTTGGTGGAGATAATAATGTAAACCATCCTGCACAAACCAGATCGAGCTCTCGAATTTCCGGCATCGATAAGACGGTGATCGAGTCCCTTCCATTCTTTAGATTCTCCACACTGAAAGGATCCAAAGAAGGGCTGGAATGTGCAGTCTGTCTATCGAAATTCGAAGATATTGAAATTCTCCGGTTGTTGCCAAAGTGCAAGCACGCGTTTCATATCAACTGCATCGACCATTGGCTCGAAAAACAAGCTAGCTGTCCTCTTTGCAGGCAAAGAGTTAGCTCTGAGGACTTGAAGCTCTTTACTAATTCAAGCAGCATGAGATTCTTATGGAGCAACTTATCAGAGCTGAAACAAGACTCAAACTTAGAGCTCTTTGTACAAAGAGAAGAAGAAGAACAACAACAACTCCATGGCTCTTCTAGATTCAGCATTGGAAGAAGCTTCAGAAAGATCTTAAAGAGTGACAAAGAAGAGGAAATGTTGATACAAAAGGCCTGTGCTGATGGAGATGATCAGAATAACATGAAGGACTTACACAGACACAATCACAAGATTATCGTATCCGATTTCGTCTTCATGAATCGATGGAGCAACGTCAGTTCCTCGGACCTGATGTTCTTGAACAAGGAGATGATTGATTCCATTTCAAGCAGTAGATTCACATCGTTGGAAACAGACAACATTGAGCAGTCAAAGCTGCCAAGATCAATGCAAATTAATGAAGAAATCTTGAAGATCAAAGAGGAGATGGAGATAAAGAGATCATTTGAAAGCAAACTAAGCACAATAAGTCAAAGCAACTCAGTTCAAATTCTGGGATTTCCTTCTACATCAGAATCTGCTGCAAATCCATGTCAAACAGCAAGAATCACAAGCACAGAAGAAAGAAGATCAGTTTCAGAAATCACAGGCAAATCAAGATTTGAAATTGAAATTGGGGAATCTTCTGATGTGGGAAACAATGTGAAGCAAGAAAGAATGAGACAAATTTGGTACCCAATTGCTAAAAAAACAGTCCAATGGTTTGCCAACAGAGAAACAAGGTCTCAACCAGCTGAAAACAGACAACAGACAGTAGAAACTGTATAA 1287 39.94 MIPLSLIAFCLFSVFFYVEAQAVSQEAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRSSSVGGDNNVNHPAQTRSSSRISGIDKTVIESLPFFRFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKQASCPLCRQRVSSEDLKLFTNSSSMRFLWSNLSELKQDSNLELFVQREEEEQQQLHGSSRFSIGRSFRKILKSDKEEEMLIQKACADGDDQNNMKDLHRHNHKIIVSDFVFMNRWSNVSSSDLMFLNKEMIDSISSSRFTSLETDNIEQSKLPRSMQINEEILKIKEEMEIKRSFESKLSTISQSNSVQILGFPSTSESAANPCQTARITSTEERRSVSEITGKSRFEIEIGESSDVGNNVKQERMRQIWYPIAKKTVQWFANRETRSQPAENRQQTVETV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7682684 7683970 - Hsped.09g07870.1 Hepe09g0787 579471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0787 428 SMART ring_2 113 154 IPR001841 -
Hepe09g0787 428 FunFam RING-H2 finger protein ATL43 88 162 - -
Hepe09g0787 428 CDD RING-H2_EL5-like 112 155 - -
Hepe09g0787 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 164 IPR013083 -
Hepe09g0787 428 Pfam Ring finger domain 112 155 IPR001841 -
Hepe09g0787 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 412 - -
Hepe09g0787 428 SUPERFAMILY RING/U-box 93 160 - -
Hepe09g0787 428 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0491 Hepe-Chr3:7617696 Hepe09g0787 Hepe-Chr9:7682684 1.04e-21 dispersed
Hepe09g0426 Hepe-Chr9:3869056 Hepe09g0787 Hepe-Chr9:7682684 1.64e-48 dispersed
Hepe09g0787 Hepe-Chr9:7682684 Hepe10g0467 Hepe-Chr10:5378464 1.42e-21 dispersed
Hepe09g0787 Hepe-Chr9:7682684 Hepe09g0788 Hepe-Chr9:7685137 3.06e-127 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0787 K10664 - csv:105436309 491.115