Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0842 ATGGGTATGGCGGTGGTTTTGGCAAGCGAGACGCGGTTTCCTTTTCCTCTTAGTGGAATCTCGGTGAGTTCCGATGGCAATGCCAATGGCGGCGATTATTCTCCTTATTATCTGCAGGAAGCGCTAGCGGCAATCCAGCGATATCTGCCTCCGACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCTGGTCGGGAATCGGACGTTCCGGTGGATGCTTACTCTTGCGATCATTTTCGGATATTCGAGTTCAAGGTGAGGAAGTGCACGCGTGGACGATCTCATGATTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTTTCATTACTCCGGTACGGCGTGCCCTGACTTTCGAAAAGGAAACTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGCGTGTTTGAGTGTTGGCTGCATCCTGCTCGTTACAGGACTCAGCCGTGCAAGGATGGCACTAACTGTCGACGGAGAGTCTGTTTCTTCGCTCACACTCCTGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGATTCATATGATGAATCGCCTCTGCGGCAGTGTTTTGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCGTCGGCGACTCCAGTGGACTCTCCACCGATGTCGCCGATGACTCGGTCACTCGGCCGGTCTCATGGCTCGAGTTCCATCAATGAAATGGTCGCATCCCTCCGGAACATGCATCTGAGCAAGGTGAAATCTCTTCCATCGTCCTGGAATGTTCAAATTGGATCTCCGGGTTATCCCTCTCGAATCCGCCCTGGATTTTGCAGCCTTCCAACAACACCAACTCGGGCTCCGACTAGTCATGGAGTAGGGCTGCTAGATTTCTTGGACCATGGATTGAAGGAGGAACCAGCAATGGAGCGAGTGGAATCGGGAAGGGAGCTGAGGGCGAAGATGCTACAGAAGCTGAGCAAAGAAAATTCTCTGGGGCTAGTTGATTCAAGTTCTTCATCCTGCACACCGGATGTCGACTGGGTCTCAGACCTGGTGAAGTGA 1104 53.17 MGMAVVLASETRFPFPLSGISVSSDGNANGGDYSPYYLQEALAAIQRYLPPTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPDSYDESPLRQCFDGSCAKSLPFLSSPVSVSPSATPVDSPPMSPMTRSLGRSHGSSSINEMVASLRNMHLSKVKSLPSSWNVQIGSPGYPSRIRPGFCSLPTTPTRAPTSHGVGLLDFLDHGLKEEPAMERVESGRELRAKMLQKLSKENSLGLVDSSSSSCTPDVDWVSDLVK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8293413 8294646 + Hsped.09g08420.1 Hepe09g0842 579526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0842 367 ProSiteProfiles Zinc finger C3H1-type profile. 120 146 IPR000571 GO:0046872(InterPro)
Hepe09g0842 367 PANTHER UNKEMPT FAMILY MEMBER 36 367 IPR045234 -
Hepe09g0842 367 FunFam Zinc finger CCCH domain-containing protein 66 77 145 - -
Hepe09g0842 367 Pfam RNA-binding, Nab2-type zinc finger 159 175 - -
Hepe09g0842 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 123 144 IPR000571 GO:0046872(InterPro)
Hepe09g0842 367 Gene3D - 119 183 - -
Hepe09g0842 367 SMART c3hfinal6 119 145 IPR000571 GO:0046872(InterPro)
Hepe09g0842 367 SMART c3hfinal6 154 177 IPR000571 GO:0046872(InterPro)
Hepe09g0842 367 MobiDBLite consensus disorder prediction 220 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0577 Hepe-Chr5:8188247 Hepe09g0842 Hepe-Chr9:8293413 3.24e-60 dispersed
Hepe08g0724 Hepe-Chr8:6521381 Hepe09g0842 Hepe-Chr9:8293413 1.13e-54 dispersed
Hepe02g0123 Hepe-Chr2:1418342 Hepe09g0842 Hepe-Chr9:8293413 2.97e-68 transposed
Hepe07g0289 Hepe-Chr7:2924467 Hepe09g0842 Hepe-Chr9:8293413 4.47e-56 transposed
Hepe08g2641 Hepe-Chr8:68409621 Hepe09g0842 Hepe-Chr9:8293413 1.70e-160 transposed
Hepe01g1861 Hepe-Chr1:83561963 Hepe09g0842 Hepe-Chr9:8293413 3.38e-119 wgd
Hepe08g1370 Hepe-Chr8:16076543 Hepe09g0842 Hepe-Chr9:8293413 1.58e-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56381 PF00642 zf-CCCH 2.60E-06 CL0537 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0842 - - - 0.0