Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0895 ATGAGGAAGGGAGGCTTCATCAACAACCTCAACCTCAACCTCAAGCTCAATCTCCCTCAAGAAGACCAATCCATTTCTAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTGAACAGAGATGGAGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCGCCACCTCCAATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCTTTGAAGGTAATTCAGATGAAAATTGAGGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGTCCCTATATTGTTGTTTGTTACCAATCTTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGAGGATCTTTAACAGATTTTTTGAAAAAGGTTAAAAAAATTCAAGAACCACATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAACCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGCGCGATTATGGCAAGCACATCTGGGGAGGCTAATACTTTCGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTCTTGGAGAAAGATACGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACCGGGAAATTCCCTTATTCTCCACCAGAGCAAGATGTAGGATGGATTAATTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCCGCTCCAGCCGACCAATTTACTCCCAACTTCTGTTCCTTCATTTCTGCATGTGTGCAAAAGAACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAACGATGTAGGATCTCCACTTGCAACTTTCTAA 1074 41.25 MRKGGFINNLNLNLKLNLPQEDQSISKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLTDFLKKVKKIQEPHLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERILGERYDNKSDIWSLGLILLECATGKFPYSPPEQDVGWINFYELMEAIVEGEPPSAPADQFTPNFCSFISACVQKNPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDVGSPLATF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8971228 8976820 - Hsped.09g08950.1 Hepe09g0895 579579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0895 357 Gene3D Transferase(Phosphotransferase) domain 1 153 353 - -
Hepe09g0895 357 CDD PKc_MAPKK_plant_like 71 337 - -
Hepe09g0895 357 FunFam Mitogen-activated protein kinase kinase 6 154 352 - -
Hepe09g0895 357 Pfam Protein kinase domain 75 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe09g0895 357 SUPERFAMILY Protein kinase-like (PK-like) 57 339 IPR011009 -
Hepe09g0895 357 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524(InterPro)
Hepe09g0895 357 ProSiteProfiles Protein kinase domain profile. 73 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe09g0895 357 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 19 353 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Hepe09g0895 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe09g0895 357 FunFam Mitogen-activated protein kinase kinase 6 43 152 - -
Hepe09g0895 357 SMART serkin_6 73 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe09g0895 357 PRINTS Tyrosine kinase catalytic domain signature 185 203 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe09g0895 357 PRINTS Tyrosine kinase catalytic domain signature 148 161 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe09g0895 357 PRINTS Tyrosine kinase catalytic domain signature 251 273 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe09g0895 357 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0895 K20603 - - csv:101204545 663.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2630 Hepe-Chr8:68262406 Hepe09g0895 Hepe-Chr9:8971228 2.95e-157 dispersed
Hepe08g2677 Hepe-Chr8:68806504 Hepe09g0895 Hepe-Chr9:8971228 4.97e-187 dispersed
Hepe09g0895 Hepe-Chr9:8971228 Hepe10g1802 Hepe-Chr10:54764390 8.20e-42 dispersed
Hepe09g0892 Hepe-Chr9:8937139 Hepe09g0895 Hepe-Chr9:8971228 3.75e-19 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0895 . 30 355 MAP Kinase Kinase Gene Family AT4G26070 69.9 3.3e-135 478.4
Hepe08g2677 . 48 372 MAP Kinase Kinase Gene Family AT4G26070 66.3 4.0e-125 444.9
Hepe08g2630 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.9 2.0e-108 389.4
Hepe09g0895 . 1 328 MAP Kinase Kinase Gene Family AT4G29810 67.4 3.7e-131 464.9
Hepe08g2677 . 22 346 MAP Kinase Kinase Gene Family AT4G29810 61.6 1.8e-114 409.5
Hepe08g2630 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 60.0 1.6e-110 396.4
Hepe02g1784 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.3 1.4e-227 785.8
Hepe02g1587 . 1 375 MAP Kinase Kinase Gene Family AT1G51660 66.3 2.4e-128 455.7
Hepe07g2336 . 5 322 MAP Kinase Kinase Gene Family AT1G51660 52.0 2.8e-84 309.3
Hepe02g1587 . 1 375 MAP Kinase Kinase Gene Family AT3G21220 67.0 1.9e-130 462.6
Hepe07g2336 . 49 318 MAP Kinase Kinase Gene Family AT3G21220 54.8 6.6e-83 304.7
Hepe08g2630 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 3.8e-171 597.8
Hepe09g0895 . 14 354 MAP Kinase Kinase Gene Family AT5G56580 59.6 4.9e-118 421.4
Hepe08g2677 . 32 361 MAP Kinase Kinase Gene Family AT5G56580 56.3 1.5e-106 383.3
Hepe07g2336 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.1 4.4e-107 384.8
Hepe07g2336 . 1 304 MAP Kinase Kinase Gene Family AT3G06230 51.0 3.7e-79 292.0
Hepe07g2336 . 1 316 MAP Kinase Kinase Gene Family AT1G73500 64.5 3.9e-111 398.3
Hepe02g1587 . 84 343 MAP Kinase Kinase Gene Family AT1G73500 52.5 2.2e-77 286.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73138 PF00069 Pkinase 3.00E-72 CL0016 Hepe PK