Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0905 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTGCGGATTTTGGATAGGGAAGGAGCAGTTGATTCTAGTGAAGATCTCACTAAATGCTCTGTTGGTTCTTTTCCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAAGTGCACAATCCCGCAATCCATGGTTGGGAGCTCTCCTTCTCCGGAGATTGCTAGAACTAGTCCCTTTAAACCTCCGAAAATTCCAGTTGAAACGGCGGTTCGGCGCCCATCGCTTGCTCGTTCTTCGTTTTTGAAGACGAAATCAAGGCTTGTGGAGCCGCCTTATCCTGATGGTACAAGTTTGGCAGAAGAAAAGGCTCGAGCAAAATCAACATCTGGTTCGCCATTCTATAGTTCTCCGAATATGGACTCCCCAGCTAAGATACCTGCTATGACTAGTCCTAAAGAAGCTTTGAAGTCGGGTCCGGTAACTCCTAAAACTCCATTGATTGGAACTAGTGAAAATGAGGAGGAAGATGATGATGAAGTATACAGAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTCAAAAGGACCATTTTAATCGAATGGGTTGCGTTTTTGTGCATAACAGGGTGTTTGATTGCTAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCTGCGGTCGTTTATTTTCGCAGTGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAACGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTGTTTATTTGGCTGGCTTTGGTTCTTCTAGCATGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAATGAGATTTTGAATTACGTTACACGAGCTCTTGCTGCTTCTCTCATTGGAGCAGCATTATGGCTACTGAAAACTTTGTTGGTGAAGATACTAGCTGCTTCTTTTCAATGTACTAGATTCTTCGACCGGATCCAAGAATCAATCTTCCATCAGTATATCCTGCGCACTCTATCAGGACCTCCACTGATGGAGACTGCTGAAAAGGTTGGGAGAGTGGCAAGCAGAGGGCAGTTGAGTTTCAGGCATTTGAAGAAGGAAAGGGATTATGAGCATGAAGGGAAGGAAGAAGTGATTGATGTAGATAAGCTCAAAAAGATGAAGCAAGAAAAAATTTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGTAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAATGAGGAAGAGGGTGAGCAAAAAGATAAGGAGATTAATAGTGAATGGGAAGCAAGGGCAGCAGCTTACCAAATTTTCAGGAACGTCGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAGTAAGGAGGAAGTTGATAATGTGCTGCCATTGTTTGAAGGAGCAGTCGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAGTGTTTATGTCGAACGCAAGTCGCTAGCTCACTCATTGAATGACACCAAGACTGCAATAGAGGAGCTAAACAAGCTTGCTTCTGTAGTTGTACTGATTGTGATTATCATTGAGTGGCTACTTATGATGGGTTTCTTGACGACGCAAGTACTCGTCTTCATTTCATCACAGCTTCTGCTGGTGGTTTTCATGTTTGGTAACACTGCCAGAACTATATTTGAAGCCATCATATTCGTATTTGTGATGCATCCCTATGACGTGGGGGATCGTTGCGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAAGTATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGCGATTCGATCGAATTCTCTGTTGATTTTTCCACGTCAATTGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACTTGGAGAGCAAACCTCAGTTCTGGCGTCCGAACCATAGTGTCCTCGTGAAGGAGATCGAGAACGTCAACAAGATGAAACTCGGTCTATATGTCAATCACACCATAAACTTTCAGAACTATGGCGACAAGAGCAGTCGCAAATCGGAACTAGTCTTAGAGTTGAAGAAAATTTTCGAAGATCTCGGCATCAAGTATCATCTGCTACCTCAAGAAGTCCAGCTCAACTATGTGAGTTCAGCAGCTTCTATGGTTCCGCCCTTACGGAGATGA 2310 41.99 MADKKGTEQVVLRILDREGAVDSSEDLTKCSVGSFPDFELKETRSFKCTIPQSMVGSSPSPEIARTSPFKPPKIPVETAVRRPSLARSSFLKTKSRLVEPPYPDGTSLAEEKARAKSTSGSPFYSSPNMDSPAKIPAMTSPKEALKSGPVTPKTPLIGTSENEEEDDDEVYRTAELKVKERSGKKFKRTILIEWVAFLCITGCLIASLTIDKLLTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALAASLIGAALWLLKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMETAEKVGRVASRGQLSFRHLKKERDYEHEGKEEVIDVDKLKKMKQEKISAWTMRGLINVISSSGLSTISNTIENFNEEEGEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEVDNVLPLFEGAVETGKIKRKTLKNWLVSVYVERKSLAHSLNDTKTAIEELNKLASVVVLIVIIIEWLLMMGFLTTQVLVFISSQLLLVVFMFGNTARTIFEAIIFVFVMHPYDVGDRCVVDGVQMIVEEMNILTTIFLKYDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVLVKEIENVNKMKLGLYVNHTINFQNYGDKSSRKSELVLELKKIFEDLGIKYHLLPQEVQLNYVSSAASMVPPLRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9063865 9067329 + Hsped.09g09050.1 Hepe09g0905 579589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0905 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 64 759 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Hepe09g0905 769 FunFam Predicted mechanosensitive ion channel 598 647 - -
Hepe09g0905 769 Pfam Mechanosensitive ion channel, beta-domain 591 647 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe09g0905 769 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Hepe09g0905 769 MobiDBLite consensus disorder prediction 112 128 - -
Hepe09g0905 769 PIRSF Memb_At2g17000 25 768 IPR016688 -
Hepe09g0905 769 Gene3D - 598 647 IPR023408 -
Hepe09g0905 769 MobiDBLite consensus disorder prediction 51 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0399 Hepe-Chr2:3826959 Hepe09g0905 Hepe-Chr9:9063865 1.82e-21 dispersed
Hepe03g0405 Hepe-Chr3:5803083 Hepe09g0905 Hepe-Chr9:9063865 1.37e-207 dispersed
Hepe09g0905 Hepe-Chr9:9063865 Hepe08g0320 Hepe-Chr8:2865666 2.10e-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0905 K22048 - csv:101209209 1278.85