Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0905 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTGCGGATTTTGGATAGGGAAGGAGCAGTTGATTCTAGTGAAGATCTCACTAAATGCTCTGTTGGTTCTTTTCCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAAGTGCACAATCCCGCAATCCATGGTTGGGAGCTCTCCTTCTCCGGAGATTGCTAGAACTAGTCCCTTTAAACCTCCGAAAATTCCAGTTGAAACGGCGGTTCGGCGCCCATCGCTTGCTCGTTCTTCGTTTTTGAAGACGAAATCAAGGCTTGTGGAGCCGCCTTATCCTGATGGTACAAGTTTGGCAGAAGAAAAGGCTCGAGCAAAATCAACATCTGGTTCGCCATTCTATAGTTCTCCGAATATGGACTCCCCAGCTAAGATACCTGCTATGACTAGTCCTAAAGAAGCTTTGAAGTCGGGTCCGGTAACTCCTAAAACTCCATTGATTGGAACTAGTGAAAATGAGGAGGAAGATGATGATGAAGTATACAGAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTCAAAAGGACCATTTTAATCGAATGGGTTGCGTTTTTGTGCATAACAGGGTGTTTGATTGCTAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCTGCGGTCGTTTATTTTCGCAGTGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAACGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTGTTTATTTGGCTGGCTTTGGTTCTTCTAGCATGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAATGAGATTTTGAATTACGTTACACGAGCTCTTGCTGCTTCTCTCATTGGAGCAGCATTATGGCTACTGAAAACTTTGTTGGTGAAGATACTAGCTGCTTCTTTTCAATGTACTAGATTCTTCGACCGGATCCAAGAATCAATCTTCCATCAGTATATCCTGCGCACTCTATCAGGACCTCCACTGATGGAGACTGCTGAAAAGGTTGGGAGAGTGGCAAGCAGAGGGCAGTTGAGTTTCAGGCATTTGAAGAAGGAAAGGGATTATGAGCATGAAGGGAAGGAAGAAGTGATTGATGTAGATAAGCTCAAAAAGATGAAGCAAGAAAAAATTTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGTAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAATGAGGAAGAGGGTGAGCAAAAAGATAAGGAGATTAATAGTGAATGGGAAGCAAGGGCAGCAGCTTACCAAATTTTCAGGAACGTCGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAGTAAGGAGGAAGTTGATAATGTGCTGCCATTGTTTGAAGGAGCAGTCGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAGTGTTTATGTCGAACGCAAGTCGCTAGCTCACTCATTGAATGACACCAAGACTGCAATAGAGGAGCTAAACAAGCTTGCTTCTGTAGTTGTACTGATTGTGATTATCATTGAGTGGCTACTTATGATGGGTTTCTTGACGACGCAAGTACTCGTCTTCATTTCATCACAGCTTCTGCTGGTGGTTTTCATGTTTGGTAACACTGCCAGAACTATATTTGAAGCCATCATATTCGTATTTGTGATGCATCCCTATGACGTGGGGGATCGTTGCGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAAGTATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGCGATTCGATCGAATTCTCTGTTGATTTTTCCACGTCAATTGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACTTGGAGAGCAAACCTCAGTTCTGGCGTCCGAACCATAGTGTCCTCGTGAAGGAGATCGAGAACGTCAACAAGATGAAACTCGGTCTATATGTCAATCACACCATAAACTTTCAGAACTATGGCGACAAGAGCAGTCGCAAATCGGAACTAGTCTTAGAGTTGAAGAAAATTTTCGAAGATCTCGGCATCAAGTATCATCTGCTACCTCAAGAAGTCCAGCTCAACTATGTGAGTTCAGCAGCTTCTATGGTTCCGCCCTTACGGAGATGA 2310 41.99 MADKKGTEQVVLRILDREGAVDSSEDLTKCSVGSFPDFELKETRSFKCTIPQSMVGSSPSPEIARTSPFKPPKIPVETAVRRPSLARSSFLKTKSRLVEPPYPDGTSLAEEKARAKSTSGSPFYSSPNMDSPAKIPAMTSPKEALKSGPVTPKTPLIGTSENEEEDDDEVYRTAELKVKERSGKKFKRTILIEWVAFLCITGCLIASLTIDKLLTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALAASLIGAALWLLKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMETAEKVGRVASRGQLSFRHLKKERDYEHEGKEEVIDVDKLKKMKQEKISAWTMRGLINVISSSGLSTISNTIENFNEEEGEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEVDNVLPLFEGAVETGKIKRKTLKNWLVSVYVERKSLAHSLNDTKTAIEELNKLASVVVLIVIIIEWLLMMGFLTTQVLVFISSQLLLVVFMFGNTARTIFEAIIFVFVMHPYDVGDRCVVDGVQMIVEEMNILTTIFLKYDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVLVKEIENVNKMKLGLYVNHTINFQNYGDKSSRKSELVLELKKIFEDLGIKYHLLPQEVQLNYVSSAASMVPPLRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9063865 9067329 + Hsped.09g09050.1 Hepe09g0905 579589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0905 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 64 759 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Hepe09g0905 769 FunFam Predicted mechanosensitive ion channel 598 647 - -
Hepe09g0905 769 Pfam Mechanosensitive ion channel, beta-domain 591 647 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe09g0905 769 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Hepe09g0905 769 MobiDBLite consensus disorder prediction 112 128 - -
Hepe09g0905 769 PIRSF Memb_At2g17000 25 768 IPR016688 -
Hepe09g0905 769 Gene3D - 598 647 IPR023408 -
Hepe09g0905 769 MobiDBLite consensus disorder prediction 51 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0905 K22048 - - csv:101209209 1278.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0399 Hepe-Chr2:3826959 Hepe09g0905 Hepe-Chr9:9063865 1.82e-21 dispersed
Hepe03g0405 Hepe-Chr3:5803083 Hepe09g0905 Hepe-Chr9:9063865 1.37e-207 dispersed
Hepe09g0905 Hepe-Chr9:9063865 Hepe08g0320 Hepe-Chr8:2865666 2.10e-164 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g106 . . . . . . Bma07g00558 . . . . . . . Sed08g0905 . Cpe18g00332 Bhi02g01835 Tan09g1100 Cmetu02g0585 . Hepe09g0905 . . . . . . . . . . . Cone4ag0813 Cone7ag0765 . . . . Blo08g00359 . Bda02g00375 Bda09g01071 Bpe08g00538 . . . . . . . . . . . . . . . . . . . Cla03g01465 Cam03g1541 Cec03g1583 Cco03g1576 Clacu03g1565 Cmu03g2121 Cre03g1794 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1964 . 122 510 Mechanosensitive Ion Channel Family AT4G00290 65.6 4.6e-146 515.0
Hepe10g0430 . 10 688 Mechanosensitive Ion Channel Family AT5G10490 57.1 1.9e-200 696.0
Hepe07g0565 . 64 724 Mechanosensitive Ion Channel Family AT5G10490 57.9 2.5e-195 679.1
Hepe10g0430 . 10 653 Mechanosensitive Ion Channel Family AT1G58200 56.9 1.5e-192 669.8
Hepe07g0565 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 51.4 3.2e-174 609.0
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G53470 55.5 3.4e-261 898.3
Hepe08g0320 . 39 915 Mechanosensitive Ion Channel Family AT3G14810 51.8 3.1e-243 838.6
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G78610 58.4 3.9e-278 954.5
Hepe08g0320 . 216 916 Mechanosensitive Ion Channel Family AT2G17000 60.2 3.4e-234 808.5
Hepe09g0905 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.0 6.0e-195 677.9
Hepe03g0405 . 108 684 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.6e-150 529.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47