Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0945 ATGGCCCTCTCCATTTCTTCCACTGCGCTCTCAACTCTCTCAATCAGAGAATATTCATCAAACAGAGGACATTTTCCGGGAAAATTCCGAAAATCAAAAGATAAGCTCCGGCGAGATAATTACTGTTCCGAATTGAAGGCAGGAAAATCCGGCGTGTCCAGCGTCTGTGAACCGCTCCCTCCCGATCGACCGCTCTGGTTCCCCGGCAGCAGCCCGCCTGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGTTTCGATCCGCTTGGATTAGGTTCCGATCCAGAGCTATTAAAATGGTTCGCACAAGCAGAGCTAATGCACGCGAGATGGGCAATGCTAGCAGTGGCCGGAATCCTGCTACCGGAATGGTTGGAAAGCTTAGGAATAATACAGAATTTCTCATGGTACGAGGCCGGGACAAGAGAGTATTTTGCAGGCCCGACGACGTTGCTCGTGGCGCAATTGGGTCTGATGGGTTGGGTGGAGGGGCGGCGGTGGGCGGACTTGGTCAACCCGGGCAGCGTCGACGTGGACCTCAAACTGCCCCACAAGAAGAACCCAAAGCCCGACGTGGGGTACCCGGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGTTCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATTAAGAATGGGCGGTTGGCGATGTTGGCGTTTGTTGGGTTGTGGTTTCAGGCTATTTATACTGGTCAAGGTCCGCTTCAGAATTTGGCCGCTCACCTCGCAGATCCTGGCCACTGCAACATTTTTTCGGCATTCAGTTCAGGATGA 807 55.02 MALSISSTALSTLSIREYSSNRGHFPGKFRKSKDKLRRDNYCSELKAGKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWLESLGIIQNFSWYEAGTREYFAGPTTLLVAQLGLMGWVEGRRWADLVNPGSVDVDLKLPHKKNPKPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLQNLAAHLADPGHCNIFSAFSSG 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9504103 9508603 - Hsped.09g09450.1 Hepe09g0945 579629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0945 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 38 262 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Hepe09g0945 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Hepe09g0945 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
Hepe09g0945 268 SUPERFAMILY Chlorophyll a-b binding protein 62 265 - -
Hepe09g0945 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0945 K08908 - - csv:101211430 475.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0760 Hepe-Chr2:8333480 Hepe09g0945 Hepe-Chr9:9504103 1.32e-42 dispersed
Hepe09g0945 Hepe-Chr9:9504103 Hepe10g1514 Hepe-Chr10:51884660 2.26e-108 dispersed
Hepe09g0945 Hepe-Chr9:9504103 Hepe09g0112 Hepe-Chr9:895168 4.07e-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g48 Blo01g00576 . . . . . . . . . . . . . Sed12g1695 Cpe04g01009 . Bhi02g01759 Tan09g1055 Cmetu02g0801 . Hepe09g0945 . . . . . . . . . . . Cone4ag0830 . . . . Cme02g00318 . . . . . . . . . . . . . . Car11g00625 . . . . . . . . . Cla03g01434 Cam03g1513 Cec03g1553 Cco03g1546 Clacu03g1538 Cmu03g2095 Cre03g1766 . Csa01g03007 Chy02g01290 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1213 . 1 448 Chloroplast and Mitochondria Gene Families AT2G28800 61.4 1.1e-140 496.9
Hepe10g0061 . 73 414 Chloroplast and Mitochondria Gene Families AT2G28800 56.9 7.3e-100 361.3
Hepe02g0760 . 3 255 Chloroplast and Mitochondria Gene Families AT1G15820 80.8 4.7e-118 421.0
Hepe07g1785 . 2 265 Chloroplast and Mitochondria Gene Families AT3G27690 76.7 9.8e-120 426.8
Hepe03g0532 . 2 265 Chloroplast and Mitochondria Gene Families AT3G27690 76.3 2.4e-118 422.2
Hepe03g0533 . 2 265 Chloroplast and Mitochondria Gene Families AT3G27690 76.3 2.4e-118 422.2
Hepe07g1783 . 2 265 Chloroplast and Mitochondria Gene Families AT3G27690 74.8 7.0e-118 420.6
Hepe02g1178 . 1 265 Chloroplast and Mitochondria Gene Families AT3G27690 76.1 1.2e-117 419.9
Hepe01g1350 . 3 264 Chloroplast and Mitochondria Gene Families AT3G27690 68.4 8.1e-98 354.0
Hepe07g1095 . 5 262 Chloroplast and Mitochondria Gene Families AT3G27690 67.4 3.1e-97 352.1
Hepe06g0214 . 72 275 Chloroplast and Mitochondria Gene Families AT3G27690 53.1 2.1e-53 206.5
Hepe10g1514 . 3 267 Chloroplast and Mitochondria Gene Families AT3G61470 80.9 5.0e-128 454.1
Hepe09g0945 . 61 266 Chloroplast and Mitochondria Gene Families AT3G61470 66.5 1.4e-85 313.2
Hepe09g0112 . 22 249 Chloroplast and Mitochondria Gene Families AT3G61470 51.7 5.0e-64 241.5
Hepe02g2965 . 1 198 Chloroplast and Mitochondria Gene Families AT3G54890 82.1 1.2e-90 329.7
Hepe04g0768 . 2 287 Chloroplast and Mitochondria Gene Families AT3G08940 81.9 2.7e-135 478.4
Hepe01g2379 . 54 316 Chloroplast and Mitochondria Gene Families AT1G76570 81.7 9.7e-129 456.8
Hepe09g1201 . 1 271 Chloroplast and Mitochondria Gene Families AT1G61520 86.1 9.9e-135 476.5
Hepe07g1785 . 5 265 Chloroplast and Mitochondria Gene Families AT2G05070 77.8 6.7e-120 427.2
Hepe07g1783 . 5 265 Chloroplast and Mitochondria Gene Families AT2G05070 77.4 1.9e-119 425.6
Hepe03g0532 . 5 265 Chloroplast and Mitochondria Gene Families AT2G05070 77.4 7.4e-119 423.7
Hepe03g0533 . 5 265 Chloroplast and Mitochondria Gene Families AT2G05070 77.4 7.4e-119 423.7
Hepe02g1178 . 27 265 Chloroplast and Mitochondria Gene Families AT2G05070 83.7 8.2e-118 420.2
Hepe07g1095 . 8 262 Chloroplast and Mitochondria Gene Families AT2G05070 68.0 7.2e-98 354.0
Hepe01g1350 . 11 264 Chloroplast and Mitochondria Gene Families AT2G05070 68.4 4.7e-97 351.3
Hepe06g0214 . 72 275 Chloroplast and Mitochondria Gene Families AT2G05070 53.6 1.4e-53 206.8
Hepe07g1785 . 5 237 Chloroplast and Mitochondria Gene Families AT2G05100 76.9 2.0e-102 369.4
Hepe07g1783 . 5 237 Chloroplast and Mitochondria Gene Families AT2G05100 76.6 1.7e-101 366.3
Hepe03g0532 . 5 237 Chloroplast and Mitochondria Gene Families AT2G05100 77.0 3.7e-101 365.2
Hepe03g0533 . 5 237 Chloroplast and Mitochondria Gene Families AT2G05100 77.0 3.7e-101 365.2
Hepe02g1178 . 8 237 Chloroplast and Mitochondria Gene Families AT2G05100 77.2 1.6e-99 359.8
Hepe07g1095 . 8 234 Chloroplast and Mitochondria Gene Families AT2G05100 67.6 1.3e-82 303.5
Hepe01g1350 . 11 236 Chloroplast and Mitochondria Gene Families AT2G05100 67.7 2.5e-81 299.3
Hepe06g0214 . 72 259 Chloroplast and Mitochondria Gene Families AT2G05100 51.8 1.4e-44 177.2
Hepe04g0768 . 1 169 Chloroplast and Mitochondria Gene Families AT2G40100 74.6 8.4e-69 256.9
Hepe03g0532 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29930 89.5 6.1e-137 483.8
Hepe03g0533 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29930 89.5 6.1e-137 483.8
Hepe07g1785 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29930 88.0 9.7e-135 476.5
Hepe07g1783 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29930 86.9 1.7e-134 475.7
Hepe02g1178 . 4 265 Chloroplast and Mitochondria Gene Families AT1G29930 84.9 1.7e-126 449.1
Hepe01g1350 . 46 264 Chloroplast and Mitochondria Gene Families AT1G29930 75.5 1.7e-94 342.8
Hepe07g1095 . 32 262 Chloroplast and Mitochondria Gene Families AT1G29930 69.8 2.9e-94 342.0
Hepe03g0534 . 1 103 Chloroplast and Mitochondria Gene Families AT1G29930 83.7 4.3e-42 168.7
Hepe03g0532 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29920 89.1 2.3e-136 481.9
Hepe03g0533 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29920 89.1 2.3e-136 481.9
Hepe07g1785 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29920 87.6 3.7e-134 474.6
Hepe07g1783 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29920 86.5 6.3e-134 473.8
Hepe02g1178 . 4 265 Chloroplast and Mitochondria Gene Families AT1G29920 84.9 2.2e-126 448.7
Hepe01g1350 . 46 264 Chloroplast and Mitochondria Gene Families AT1G29920 75.5 1.7e-94 342.8
Hepe07g1095 . 32 262 Chloroplast and Mitochondria Gene Families AT1G29920 69.8 2.9e-94 342.0
Hepe03g0534 . 1 103 Chloroplast and Mitochondria Gene Families AT1G29920 82.7 1.6e-41 166.8
Hepe03g0532 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29910 89.1 2.3e-136 481.9
Hepe03g0533 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29910 89.1 2.3e-136 481.9
Hepe07g1785 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29910 87.6 3.7e-134 474.6
Hepe07g1783 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29910 86.5 6.3e-134 473.8
Hepe02g1178 . 4 265 Chloroplast and Mitochondria Gene Families AT1G29910 84.9 2.2e-126 448.7
Hepe01g1350 . 46 264 Chloroplast and Mitochondria Gene Families AT1G29910 75.5 1.7e-94 342.8
Hepe07g1095 . 32 262 Chloroplast and Mitochondria Gene Families AT1G29910 69.8 2.9e-94 342.0
Hepe03g0534 . 1 103 Chloroplast and Mitochondria Gene Families AT1G29910 82.7 1.6e-41 166.8
Hepe06g0214 . 11 290 Chloroplast and Mitochondria Gene Families AT4G10340 84.3 2.4e-136 481.9
Hepe02g1178 . 49 253 Chloroplast and Mitochondria Gene Families AT4G10340 53.6 6.5e-57 218.0
Hepe03g0532 . 37 253 Chloroplast and Mitochondria Gene Families AT4G10340 51.6 6.5e-57 218.0
Hepe03g0533 . 37 253 Chloroplast and Mitochondria Gene Families AT4G10340 51.6 6.5e-57 218.0
Hepe07g1785 . 37 253 Chloroplast and Mitochondria Gene Families AT4G10340 52.0 6.5e-57 218.0
Hepe07g1783 . 37 253 Chloroplast and Mitochondria Gene Families AT4G10340 51.1 8.5e-57 217.6
Hepe07g1095 . 44 250 Chloroplast and Mitochondria Gene Families AT4G10340 53.6 1.1e-51 200.7
Hepe01g1350 . 42 252 Chloroplast and Mitochondria Gene Families AT4G10340 51.4 3.1e-51 199.1
Hepe03g0532 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34420 88.4 3.7e-134 474.6
Hepe03g0533 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34420 88.4 3.7e-134 474.6
Hepe07g1785 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34420 86.9 5.8e-132 467.2
Hepe07g1783 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34420 85.8 9.9e-132 466.5
Hepe02g1178 . 4 265 Chloroplast and Mitochondria Gene Families AT2G34420 84.9 4.8e-126 447.6
Hepe01g1350 . 46 264 Chloroplast and Mitochondria Gene Families AT2G34420 75.9 2.2e-94 342.4
Hepe07g1095 . 32 262 Chloroplast and Mitochondria Gene Families AT2G34420 70.2 2.8e-94 342.0
Hepe03g0534 . 1 103 Chloroplast and Mitochondria Gene Families AT2G34420 79.8 4.4e-39 158.7
Hepe03g0532 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34430 88.3 1.8e-136 482.3
Hepe03g0533 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34430 88.3 1.8e-136 482.3
Hepe07g1785 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34430 88.0 6.7e-136 480.3
Hepe07g1783 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34430 86.1 1.6e-134 475.7
Hepe02g1178 . 4 265 Chloroplast and Mitochondria Gene Families AT2G34430 85.2 6.7e-128 453.8
Hepe01g1350 . 34 264 Chloroplast and Mitochondria Gene Families AT2G34430 71.4 2.2e-94 342.4
Hepe07g1095 . 32 262 Chloroplast and Mitochondria Gene Families AT2G34430 71.0 2.8e-94 342.0
Hepe06g0214 . 72 275 Chloroplast and Mitochondria Gene Families AT2G34430 51.0 2.7e-52 202.6
Hepe03g0534 . 1 103 Chloroplast and Mitochondria Gene Families AT2G34430 79.6 2.1e-41 166.4
Hepe04g0768 . 4 287 Chloroplast and Mitochondria Gene Families AT5G01530 83.2 2.7e-138 488.4
Hepe07g0576 . 48 307 Chloroplast and Mitochondria Gene Families AT5G40810 93.1 6.1e-142 500.4
Hepe07g0576 . 1 307 Chloroplast and Mitochondria Gene Families AT3G27240 84.5 8.8e-148 520.0
Hepe08g0701 . 5 327 Chloroplast and Mitochondria Gene Families AT2G30160 73.8 2.7e-142 501.9
Hepe04g0728 . 10 307 Chloroplast and Mitochondria Gene Families AT2G30160 66.0 4.6e-110 394.8
Hepe08g0701 . 5 327 Chloroplast and Mitochondria Gene Families AT1G07030 75.2 1.0e-141 500.0
Hepe04g0728 . 6 307 Chloroplast and Mitochondria Gene Families AT1G07030 69.2 2.9e-117 418.7
Hepe03g1870 . 1 340 Chloroplast and Mitochondria Gene Families AT2G47490 69.6 1.8e-132 469.2
Hepe02g2690 . 1 317 Chloroplast and Mitochondria Gene Families AT2G47490 61.9 8.2e-109 390.6
Hepe02g2690 . 9 357 Chloroplast and Mitochondria Gene Families AT1G25380 63.4 2.4e-120 429.1
Hepe03g1870 . 11 332 Chloroplast and Mitochondria Gene Families AT1G25380 57.8 7.3e-101 364.4
Hepe07g1961 . 6 584 Chloroplast and Mitochondria Gene Families AT4G21490 74.5 2.3e-258 888.3
Hepe08g0511 . 5 584 Chloroplast and Mitochondria Gene Families AT4G21490 69.2 2.8e-240 828.2
Hepe02g0166 . 4 574 Chloroplast and Mitochondria Gene Families AT4G21490 64.9 6.4e-224 773.9
Hepe09g1483 . 10 179 Chloroplast and Mitochondria Gene Families AT1G17530 59.3 1.3e-50 196.4
Hepe09g1483 . 12 183 Chloroplast and Mitochondria Gene Families AT3G04800 58.4 6.1e-51 197.6
Hepe09g1483 . 5 183 Chloroplast and Mitochondria Gene Families AT1G72750 58.8 2.9e-53 205.3
Hepe10g1863 . 9 243 Chloroplast and Mitochondria Gene Families AT1G26100 60.0 7.1e-73 270.8
Hepe02g3250 . 1 226 Chloroplast and Mitochondria Gene Families AT5G38630 68.3 7.7e-88 320.5
Hepe06g1255 . 23 233 Chloroplast and Mitochondria Gene Families AT4G25570 66.8 8.4e-81 297.4
Hepe02g2597 . 5 222 Chloroplast and Mitochondria Gene Families AT1G14730 51.4 3.7e-63 238.4
Hepe02g2492 . 6 366 Chloroplast and Mitochondria Gene Families AT5G14040 81.2 1.4e-171 599.4
Hepe02g1660 . 11 371 Chloroplast and Mitochondria Gene Families AT5G14040 75.8 3.0e-158 555.1
Hepe02g0359 . 11 303 Chloroplast and Mitochondria Gene Families AT5G14040 52.2 3.1e-86 315.8
Hepe02g1660 . 8 371 Chloroplast and Mitochondria Gene Families AT3G48850 69.8 3.1e-144 508.4
Hepe02g2492 . 8 364 Chloroplast and Mitochondria Gene Families AT3G48850 69.6 2.9e-142 501.9
Hepe02g0359 . 11 303 Chloroplast and Mitochondria Gene Families AT3G48850 51.5 1.6e-87 320.1
Hepe02g0359 . 14 308 Chloroplast and Mitochondria Gene Families AT2G17270 75.9 3.1e-132 468.4
Hepe02g1660 . 63 370 Chloroplast and Mitochondria Gene Families AT2G17270 50.6 1.5e-86 316.6
Hepe02g2492 . 64 361 Chloroplast and Mitochondria Gene Families AT2G17270 51.7 5.6e-86 314.7
Hepe02g3214 . 16 319 Chloroplast and Mitochondria Gene Families AT5G15640 75.2 1.1e-129 459.9
Hepe05g1353 . 17 319 Chloroplast and Mitochondria Gene Families AT5G15640 50.5 8.1e-80 294.3
Hepe01g1906 . 12 344 Chloroplast and Mitochondria Gene Families AT5G26200 67.3 1.1e-122 436.8
Hepe03g1443 . 1 344 Chloroplast and Mitochondria Gene Families AT5G26200 57.4 2.1e-105 379.4
Hepe03g1443 . 1 348 Chloroplast and Mitochondria Gene Families AT1G72820 76.4 1.0e-147 520.0
Hepe01g1906 . 1 347 Chloroplast and Mitochondria Gene Families AT1G72820 69.1 6.7e-128 454.1
Hepe06g1518 . 78 283 Chloroplast and Mitochondria Gene Families AT5G52570 53.9 2.0e-51 199.5
Hepe07g0127 . 1 215 Chloroplast and Mitochondria Gene Families AT4G25700 65.3 6.3e-71 264.2
Hepe06g1518 . 39 200 Chloroplast and Mitochondria Gene Families AT4G25700 64.3 2.1e-58 222.6
Hepe02g0164 . 109 302 Chloroplast and Mitochondria Gene Families AT4G03320 51.3 3.2e-59 225.7
Hepe07g1089 . 12 334 Chloroplast and Mitochondria Gene Families AT5G54290 67.0 5.4e-109 391.3
Hepe09g0521 . 33 542 Chloroplast and Mitochondria Gene Families AT2G18710 83.0 7.9e-240 826.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001904 3 2 3 3 2 2 3 2 2 2 2 2 2 2 2 2 2 4 3 2 2 2 2 1 3 1 2 3 2 2 67