Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0945 ATGGCCCTCTCCATTTCTTCCACTGCGCTCTCAACTCTCTCAATCAGAGAATATTCATCAAACAGAGGACATTTTCCGGGAAAATTCCGAAAATCAAAAGATAAGCTCCGGCGAGATAATTACTGTTCCGAATTGAAGGCAGGAAAATCCGGCGTGTCCAGCGTCTGTGAACCGCTCCCTCCCGATCGACCGCTCTGGTTCCCCGGCAGCAGCCCGCCTGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGTTTCGATCCGCTTGGATTAGGTTCCGATCCAGAGCTATTAAAATGGTTCGCACAAGCAGAGCTAATGCACGCGAGATGGGCAATGCTAGCAGTGGCCGGAATCCTGCTACCGGAATGGTTGGAAAGCTTAGGAATAATACAGAATTTCTCATGGTACGAGGCCGGGACAAGAGAGTATTTTGCAGGCCCGACGACGTTGCTCGTGGCGCAATTGGGTCTGATGGGTTGGGTGGAGGGGCGGCGGTGGGCGGACTTGGTCAACCCGGGCAGCGTCGACGTGGACCTCAAACTGCCCCACAAGAAGAACCCAAAGCCCGACGTGGGGTACCCGGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGTTCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATTAAGAATGGGCGGTTGGCGATGTTGGCGTTTGTTGGGTTGTGGTTTCAGGCTATTTATACTGGTCAAGGTCCGCTTCAGAATTTGGCCGCTCACCTCGCAGATCCTGGCCACTGCAACATTTTTTCGGCATTCAGTTCAGGATGA 807 55.02 MALSISSTALSTLSIREYSSNRGHFPGKFRKSKDKLRRDNYCSELKAGKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWLESLGIIQNFSWYEAGTREYFAGPTTLLVAQLGLMGWVEGRRWADLVNPGSVDVDLKLPHKKNPKPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLQNLAAHLADPGHCNIFSAFSSG 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9504103 9508603 - Hsped.09g09450.1 Hepe09g0945 579629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0945 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 38 262 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Hepe09g0945 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Hepe09g0945 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
Hepe09g0945 268 SUPERFAMILY Chlorophyll a-b binding protein 62 265 - -
Hepe09g0945 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0760 Hepe-Chr2:8333480 Hepe09g0945 Hepe-Chr9:9504103 1.32e-42 dispersed
Hepe09g0945 Hepe-Chr9:9504103 Hepe10g1514 Hepe-Chr10:51884660 2.26e-108 dispersed
Hepe09g0945 Hepe-Chr9:9504103 Hepe09g0112 Hepe-Chr9:895168 4.07e-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0945 K08908 - csv:101211430 475.707