Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1037 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCCGCTTCAATTGTGGAAGGAGATGGCGTAGCTCCACCAGCTGATCCTGAAGCCGTGGTAGAAGATGATTATTCTGATGAAGAGATTGATGTCGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGTCTTAAAGAGCAGACCAAGGTTAAGGAAGGGATCGATATTGCGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACACGACGGGATCTTGAAGTACATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGAAAACCAGTAACCGGGGCATCGGATAATCTGCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGGAATGGACCGGCTGCCATAGCCAAGTACCAGGCAGACAATGCAATTCCCGGACGAAACGACGGGTGTAATTCGATCGGTCCAACCCCACACACCTTGCAGGAACTTCAGGATACCACCCTAGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCCCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCGCCATGGTGGCCTAATGGGGTTGAGGAATGGTGGCCTCAGCTCGGGTTGCCAAAGGACCAAGGTCCTCCACCTTACAAGAAGCCTCACGACTTGAAGAAGGCGTGGAAAGTTGGTGTTTTGACTGCGGTCATCAAGCATATGTCCCCTGATATAGCTAAGATCCGCAAGCTTGTTAGGCAATCCAAGTGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGGTCTTGGCTCGGGAGCTTTATCCCGACTCTTGCCTGCCTTTGTCTTCTGGTGGGGGAAGTGGATCGTTGGTCATTAACGATTGCAGCGAGTACGATGTAGAAGGTGCTGAGGAGGAACCAAACTTTGATGTTCAAGATCGTAAACCTGATAACCATAGCTCATTCAACATGGGAATGGAGAGAATGAGAGAACGTGTGCCTCTTCGACAACCACCTTATGCAATCAAAGGAGAGGTTCCCACAAACTTGGATTTTATGCGAAAGAGGAAACCAACCAGTGATCTGACCATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTACAGCGAACTCCGTCTCGGGTTTAATGAAAGGACATCCAGAGACAACCATCAGTTGACGTGCCCATACAGAACTTCCTCAGAGTTCAGTGGTTCAAATTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAATCATTTGTGCCGCCCAAGCCAGCTCCACCCCCAGTCAGCTCGGTTCCATCTTCCTTTGACTTGACCAGTTTAGGAGTTCCAGAAGATGGCCAGAAGCTGATCAGTGAGCTCATGTCGATCTATGACACCAACATCCAAGGCAACAAGAACAATGTAAACACCGGTAATGGTGCCATCACAGAGAACCAAAATCTTCCTCAGTTGAAGATCCAACCTCAACAAGAAGAATACTTCCGCAATCAAGGTATAATGATTGATGGAAACTTCTTCGAAGGGTCGAACGCTTCAAGCAGCCATCAAATGTTTACAAGAGACGAAGGCCAATTCGACCGGTTCAAGCCAATGAATTCGCCTTTTGAAAACAACCACCACCACAACAATAACAACAACAACAACTTCCACTTGATGTTCGGCTCTCCGTTTGATTTGTCGACCTTCGACTACAAAGATGAAGTACCTGGAGCAGCAGCCATCGATACACTGTCGAAACAGCAGGATATTTCGTTATGGTATCAGTAA 1881 46.73 MMMMFNEMGFCDDMDFLSASIVEGDGVAPPADPEAVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQTKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPNGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPDSCLPLSSGGGSGSLVINDCSEYDVEGAEEEPNFDVQDRKPDNHSSFNMGMERMRERVPLRQPPYAIKGEVPTNLDFMRKRKPTSDLTMMMDQKIYTCEFLQCPYSELRLGFNERTSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFVPPKPAPPPVSSVPSSFDLTSLGVPEDGQKLISELMSIYDTNIQGNKNNVNTGNGAITENQNLPQLKIQPQQEEYFRNQGIMIDGNFFEGSNASSSHQMFTRDEGQFDRFKPMNSPFENNHHHNNNNNNNFHLMFGSPFDLSTFDYKDEVPGAAAIDTLSKQQDISLWYQ 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10749433 10753053 - Hsped.09g10370.1 Hepe09g1037 579721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1037 626 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Hepe09g1037 626 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Hepe09g1037 626 Coils Coil 34 68 - -
Hepe09g1037 626 FunFam Ethylene insensitive 3-like 1 81 159 - -
Hepe09g1037 626 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Hepe09g1037 626 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 615 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Hepe09g1037 626 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Hepe09g1037 626 FunFam Ethylene insensitive 3-like 1 169 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1037 K14514 - - csv:101206055 1150.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2847 Hepe-Chr2:77535414 Hepe09g1037 Hepe-Chr9:10749433 4.87e-239 dispersed
Hepe09g1037 Hepe-Chr9:10749433 Hepe09g1085 Hepe-Chr9:12071998 9.23e-113 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g1037 . 2 625 EIL Transcription Factor Family AT2G27050 59.7 6.9e-194 674.1
Hepe02g2847 . 7 510 EIL Transcription Factor Family AT2G27050 61.5 7.0e-170 594.3
Hepe09g1085 . 68 328 EIL Transcription Factor Family AT2G27050 64.7 2.0e-92 337.0
Hepe09g1085 . 72 329 EIL Transcription Factor Family AT5G21120 51.7 2.4e-73 273.5
Hepe09g1085 . 60 580 EIL Transcription Factor Family AT1G73730 54.1 7.1e-140 494.6
Hepe09g1037 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 3.7e-104 375.9
Hepe02g2847 . 35 336 EIL Transcription Factor Family AT1G73730 60.1 1.6e-102 370.5
Hepe09g1037 . 3 625 EIL Transcription Factor Family AT3G20770 62.1 1.0e-211 733.4
Hepe02g2847 . 7 510 EIL Transcription Factor Family AT3G20770 62.9 1.5e-170 596.7
Hepe09g1085 . 68 294 EIL Transcription Factor Family AT3G20770 72.1 6.7e-94 342.0
Hepe09g1085 . 85 290 EIL Transcription Factor Family AT5G65100 58.9 1.7e-69 260.8
Hepe02g2847 . 45 300 EIL Transcription Factor Family AT5G10120 60.0 1.9e-85 313.5
Hepe09g1085 . 79 292 EIL Transcription Factor Family AT5G10120 57.5 4.6e-71 265.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56392 PF04873 EIN3 3.20E-129 No_clan Hepe TF