Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1038 ATGGCGGCGCAGGCGGTGAACGTGGTGGCAGTGGCGGTGGCCGTGGCGGTTGTGGCGGTCGGGTGGTTGTTATGTGGAGTTGAGGGTAGACAACCAGTGTTGCATAGGGTTGGAGGAGGAAAATACACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCATGAGAACTTTTATGTTGGTGATTGGCTCTATTTTGGGTTCGATAAGCATATCTACAACGTGCTCGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGAGATGTGTTCAATCTAACACAAGCAAAGCCATATTACTTTCTAAGTGGAGGAGGGTTTTGCTATCAAGGAATGAAGGTTGCTGTGATTGTTGAAGAATCTCCTCCTACTTCTCCCATTTCACCACCCAAAATCTCCAATCTTTCTCCATCTACACAACCATTTTTCCCTCTTTCCCTCTTGCTACTCACCATTGCCTTCACTAATAATTCCCTTCTCTTCTAA 525 44.76 MAAQAVNVVAVAVAVAVVAVGWLLCGVEGRQPVLHRVGGGKYTWTTNINFTDWSIHENFYVGDWLYFGFDKHIYNVLEVNKTSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSGGGFCYQGMKVAVIVEESPPTSPISPPKISNLSPSTQPFFPLSLLLLTIAFTNNSLLF 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10789431 10790810 + Hsped.09g10380.1 Hepe09g1038 579722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1038 174 PANTHER BLUE COPPER PROTEIN 16 132 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Hepe09g1038 174 ProSiteProfiles Phytocyanin domain profile. 33 133 IPR003245 GO:0009055(InterPro)
Hepe09g1038 174 Gene3D - 34 140 IPR008972 -
Hepe09g1038 174 SUPERFAMILY Cupredoxins 34 131 IPR008972 -
Hepe09g1038 174 FunFam Lamin-like protein 31 134 - -
Hepe09g1038 174 Pfam Plastocyanin-like domain 44 125 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1038 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2107 Hepe-Chr2:55042364 Hepe09g1038 Hepe-Chr9:10789431 7.01e-34 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g0215 . 1 170 Phytocyanin Superfamily AT2G25060 50.3 7.0e-44 174.1
Hepe02g2107 . 16 175 Phytocyanin Superfamily AT5G15350 50.6 1.6e-45 179.5
Hepe10g0215 . 14 171 Phytocyanin Superfamily AT4G31840 54.0 4.7e-45 177.9
Hepe07g2420 . 23 135 Phytocyanin Superfamily AT3G18590 64.3 3.0e-37 152.1
Hepe07g2420 . 23 135 Phytocyanin Superfamily AT3G18590 64.3 3.0e-37 152.1
Hepe10g0215 . 5 172 Phytocyanin Superfamily AT5G25090 51.1 3.1e-39 158.7
Hepe10g0215 . 1 170 Phytocyanin Superfamily AT2G25060 50.3 7.0e-44 174.1
Hepe10g0215 . 14 171 Phytocyanin Superfamily AT4G31840 54.0 4.7e-45 177.9
Hepe02g2107 . 16 175 Phytocyanin Superfamily AT5G15350 50.6 1.6e-45 179.5
Hepe08g0175 . 23 226 Phytocyanin Superfamily AT1G08500 54.9 2.5e-59 225.7
Hepe09g1038 . 31 157 Phytocyanin Superfamily AT2G27035 53.5 2.3e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49