Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1063 ATGGAAGACGAAGCTTCCTCCAGTTTCTTTAAAACCCCTCTCCTAACATTTGAAGTTTCAGATTCTAATTTCTCAGATTATATCATACCTGTACCTGCAGCCAAGCGCCCCAGATTCGATCACGATCTTAACGATGTCGCCGCCGCCGTCGGCAAATTCAAAGGCGTTGTACCGCAACAGAACGGCCGTTGGGGAGCGCAGATCTACGCCAACCACCAGAGGATCTGGCTAGGCACCTTCAAATCAGAGAAAGACGCCGCCATGGCTTACGACAGCGCTGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCACCAATCAATCGAGGAGCCGAATTTTCAAATCAAATTCTCCACGGATGCCGTTCTCAGCATGATCAAAGACGGATCGTATTCCTCGAAATATTCCGCTTATTTAAGAACGAAATCTCAAATTCGCGACTCGAATGTACAGAATCCCCAGAGTTTGGACAATGGCGACGGCGATGGCCATTTCTCTTGCAGCCATCTGTTCCAGAAGGAATTAACACCGAGCGACGTCGGCAAGCTCAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCGTACATCAGCGAGAACGTAGAGGAGAACGGCGACGACATCGAAATCGTCTTCTACGATACGTCGATGAAGACATGGAAGTTCCGATACTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAGGACAAGAAATTGAAGGCGAACGACATTATCACGTTTTACACATACGAGAGCTGCGGAAGAGACGAAAATGGCGGAACATTGAACTTCATAGACGTAATCTATAAGAAATCGGAAGATGATCGGAGCGAAAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAACAATGAGAAATTGCAGACCGAATTAGGGCAAAATCTGGAGAAGGAGAAGGAGAAGAAGGAGATTTTGAACAGTGAAAAATTGAACCTTAACTATGAAAATGTTGGGGGAAAGCGAATTAGGCTATTTGGAGTAAATATTGATTGA 1065 46.29 MEDEASSSFFKTPLLTFEVSDSNFSDYIIPVPAAKRPRFDHDLNDVAAAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTHQSIEEPNFQIKFSTDAVLSMIKDGSYSSKYSAYLRTKSQIRDSNVQNPQSLDNGDGDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISENVEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKDKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKSEDDRSESSCLAAEKESVNNEKLQTELGQNLEKEKEKKEILNSEKLNLNYENVGGKRIRLFGVNID 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11362082 11363248 + Hsped.09g10630.1 Hepe09g1063 579747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1063 354 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g1063 354 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Hepe09g1063 354 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g1063 354 Coils Coil 312 339 - -
Hepe09g1063 354 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677(InterPro)
Hepe09g1063 354 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 353 IPR044800 GO:0003700(InterPro)
Hepe09g1063 354 Gene3D - 165 292 IPR015300 -
Hepe09g1063 354 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g1063 354 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Hepe09g1063 354 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Hepe09g1063 354 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
Hepe09g1063 354 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Hepe09g1063 354 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g1063 354 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0751 Hepe-Chr7:9030726 Hepe09g1063 Hepe-Chr9:11362082 3.18e-28 dispersed
Hepe09g0587 Hepe-Chr9:5520619 Hepe09g1063 Hepe-Chr9:11362082 4.12e-103 dispersed
Hepe09g1063 Hepe-Chr9:11362082 Hepe03g0358 Hepe-Chr3:5131763 1.46e-10 dispersed
Hepe09g1063 Hepe-Chr9:11362082 Hepe02g2727 Hepe-Chr2:75605957 4.80e-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56394 PF02362 B3 7.40E-27 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1063 K09287 - csv:101219913 563.533