Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1066 ATGAGGCCTGTCAAACGCGAACCCGCCGCCAGCAGCCGCAGTAATCGGAGTAGAGGCGGCGGCGGTGGCGATGCTGAGAGTTTAAGGGATGTCAAGCGGGAGAGGGTTGCTCGGGAGCGAGAGAACTCCGGCGAGGACAACGTGGTTGAAGAAGAAGAGGGTCAGGAAGACTTGACGAAGCGGCGGGTTCTTCGCTCTCGGTACCTCGCGGTTATTCATGAGATTAGTGAAAGAAGAGATGATTTGACTAAGGATTCGGATAAGTTTAATGTTCTTATCAATGAGGTGGAAAAGTTGCACGAGCTAGTTCAGAAGCCAAGGGAACAAGTTGCAGATGCAGAAGCTTTGCAAGATATTGCAAGCTCCCTCGTGACTTCTATTAAGTCCCAGTCAAATGAAGGGGTTACTCCATCAGATTTTGTTAGTTGTCTGCTCAGAGAGTTTACCAACATTAACGGTTCTATAACATCTGAAGGAAACGACCTGATTTCTGTCAGTTGGAAAGATATTGGACTCAGTGTTCCGTCTATTTTCATGAATGGCTATGGATGCCGCACCATGCTTGGACCTATGAGCACTCAGTTGAAGCAGCGAAAGATTAATGTTTCCAAGAAACGTTCCAGGCCTACTGAAAGTTCTAGACCTGCAGAGGTTGAGGAAAATGGATCTGAAGGAAAAACAGATACAGATAAGAACATGGGCATCATGTTTGGAATTTTGAGGAGGAATAGAACCGTTAGACTTGAACATTTGGTATTGAATAGAAAGTCTTTTGCACAGACAGTAGAGAATTTATTTGCTCTATCCTTTCTGGTAAAGGATGGTCGGGCTGAGATAACTATTGATGAAAATGGTTTTCATTTTGTGTCACCGAAGAATGCTCCTGCCCATAGTGCCGTTATGTCACATGAAGTTAATTACAGTCATTTTGTATTCAGATACGATTTCAAGGATTGGAAGATGATGACGAATATGGTACCAGTTGGAGAGGAGCTGATGGCCCACAGAGCCTTTTTGAACCCAGTGCGGGAGCCCCAAGTAGAAGCATCCGAGGAAGATTCTGAAGCAGCAACATTACCTACTACACCAATCCGGAAACTGTCGAGAAATCGAGGTTTAGTTATGCAATCTGTTGTTGAGGATTCTCCTGATAATGGCGCTCATTCGGGACCAACTGCAATTTTGAGGTGTAAGAGAAAGCTTAGTCAAGGTTTGGAAAATTAG 1224 44.77 MRPVKREPAASSRSNRSRGGGGGDAESLRDVKRERVARERENSGEDNVVEEEEGQEDLTKRRVLRSRYLAVIHEISERRDDLTKDSDKFNVLINEVEKLHELVQKPREQVADAEALQDIASSLVTSIKSQSNEGVTPSDFVSCLLREFTNINGSITSEGNDLISVSWKDIGLSVPSIFMNGYGCRTMLGPMSTQLKQRKINVSKKRSRPTESSRPAEVEENGSEGKTDTDKNMGIMFGILRRNRTVRLEHLVLNRKSFAQTVENLFALSFLVKDGRAEITIDENGFHFVSPKNAPAHSAVMSHEVNYSHFVFRYDFKDWKMMTNMVPVGEELMAHRAFLNPVREPQVEASEEDSEAATLPTTPIRKLSRNRGLVMQSVVEDSPDNGAHSGPTAILRCKRKLSQGLEN 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11388155 11391382 - Hsped.09g10660.1 Hepe09g1066 579750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1066 407 MobiDBLite consensus disorder prediction 204 227 - -
Hepe09g1066 407 MobiDBLite consensus disorder prediction 1 57 - -
Hepe09g1066 407 MobiDBLite consensus disorder prediction 195 230 - -
Hepe09g1066 407 Pfam Nse4 C-terminal 246 333 IPR014854 -
Hepe09g1066 407 MobiDBLite consensus disorder prediction 23 45 - -
Hepe09g1066 407 PANTHER UNCHARACTERIZED 34 373 IPR027786 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(InterPro)|GO:0030915(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1066 K22825 - - csv:101220149 627.476
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g1066 . 66 402 Non-SMC Element family AT1G51130 54.0 2.4e-92 336.3
Hepe09g1066 . 66 382 Non-SMC Element family AT3G20760 52.5 3.6e-82 302.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35