Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1085 ATGGAGAATCTTATGATGGTTGATGTTGATGATGCTTTGGGAGATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAACATTGCAGAGAAAGATGTTAGTGATGAAGAAATCGAAGCTGATGATCTGGAGAAACGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAAAGACAGAAGATTGCTGCACAACAGGCTGCAGAGAAGCAGAAACCGAAGCAGACATCCGACCAGGCTCGGAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTATATGCTGAAACTGATGGAAGTATGCAAAGCTCGGGGATTTGTATATGGCATTATACCTGAAAAGGGGAAACCAGTTAGCGGTGCTTCTGATAACATTCGAGCTTGGTGGAAAGAAAAAGTTAAATTTGATAAGAATGGACCGGCTGCCATAGCTAAGTATGAAGCAGACTGTCTTGCCAAGGGAGAGGCAGATGGAAATGGAAGCGGTAACTCCCAAAGCGTTCTTCAAGACCTGCAGGATGCGACGCTCGGGTCTCTTTTGTCTTCTTTGATGCAACATTGTGATCCCCCTCAGCGGAAGTACCCTTTAGAAAAAGGGGTTCCTCCACCCTGGTGGCCCTCTGGAAATGAGGATTGGTGGACAAAACTTGGGCTATCACATGGCAATAGTCCTCCTTATAAGAAGCCACACGATTTGAAGAAGATGTGGAAAGTCGGGGTTTTAACAGCTGTGATAAAACACATGTCACCTGATATTGCAAAGATAAGGAAGCACGTACGCCAGTCAAAGTGCTTACAAGATAAGATGACAGCAAAGGAGAGTGCAATTTGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCAAGCAGTGATAATGGGGCATCTGGAATAACAGAGACACCAGTAGGTGGTCGTGGTGCAAAGCAAGCTGCAGTAAGCAGTGACAGTGACTATGATGTTGATCTTGCCGATGATGGTGTCAGGTCAGTTTCTTCTAAAGAGGACAGGAGACACCGATCAGTGGATGCAGAGCCATCCAGTAATCTGCGTAATAATGCTACTCAACCTGCTCAAGAAAAGGAGCAAGGTGAAAAGCATAGGACAAAAAGACATCGTGGTGGCAGGACAAAACCTGCCGATCAAACACTGGCTCCATCTCGGAACGAAGAAGAACCAAGCATCGAGCCAAGAAATAATTATCTAGATATAAGCCATTCTGATGTACCATTAGATAGATTTGAAATTCCAGGAAACCAACCGCAAAAGGATACTGTCACAGCTTTGAGGCCACTGGAGAAGGATTTGGATGTCCGATCAGAAGTACCAGCTCCCCGATTCGATGCGTTCTCCGCAACGCCCTCTGATAATATCAACATAATTTCCACTCAGAGCATGTATGTTGATGGAAGGCCTTTGTTGTATCCTGTAATGCAGAATGCTGAGGTACAACATGAAAGTGCTTACAATATTTATAATCCATCGGTGGAATATAGATCCAATTATGATGTGCAGCATCCTCAATTTGTTAATGATTCTCAAATGAGATTGGAGGAGGGAGTACATGTGCCAACACAACATAGAAACGACGAGACTATAGGAGGAGATTTCAACTACGTAAAAGAAACGTTCAACACCGAACAAGATAGGCCTGTTGATACACAGTTTGGATCACCAATCAACAGTCTATCATTAGATTATGGAGCATTTAACAGTCCGTTCCATCTTGGATACGATGGTGGAAGCTCGTTCGATGACTTTTTGGTCGATGACGATTTGATCCAGTACTTCGGAGCATAG 1818 43.84 MENLMMVDVDDALGDCSDMEVDDIRCDNIAEKDVSDEEIEADDLEKRMWKDRIKLKRIKERQKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEADCLAKGEADGNGSGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWTKLGLSHGNSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRKHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASGITETPVGGRGAKQAAVSSDSDYDVDLADDGVRSVSSKEDRRHRSVDAEPSSNLRNNATQPAQEKEQGEKHRTKRHRGGRTKPADQTLAPSRNEEEPSIEPRNNYLDISHSDVPLDRFEIPGNQPQKDTVTALRPLEKDLDVRSEVPAPRFDAFSATPSDNINIISTQSMYVDGRPLLYPVMQNAEVQHESAYNIYNPSVEYRSNYDVQHPQFVNDSQMRLEEGVHVPTQHRNDETIGGDFNYVKETFNTEQDRPVDTQFGSPINSLSLDYGAFNSPFHLGYDGGSSFDDFLVDDDLIQYFGA 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12071998 12074964 + Hsped.09g10850.1 Hepe09g1085 579769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1085 605 MobiDBLite consensus disorder prediction 291 406 - -
Hepe09g1085 605 MobiDBLite consensus disorder prediction 64 87 - -
Hepe09g1085 605 SUPERFAMILY DNA-binding domain of EIN3-like 170 292 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Hepe09g1085 605 MobiDBLite consensus disorder prediction 328 351 - -
Hepe09g1085 605 FunFam Ethylene insensitive 3-like 1 76 154 - -
Hepe09g1085 605 FunFam Ethylene insensitive 3-like 1 163 299 - -
Hepe09g1085 605 Coils Coil 27 47 - -
Hepe09g1085 605 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 16 568 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Hepe09g1085 605 Gene3D - 162 300 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Hepe09g1085 605 Gene3D - 76 153 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Hepe09g1085 605 Pfam Ethylene insensitive 3, DNA-binding domain 42 289 IPR047091 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1085 K14514 - - csv:101210347 1047.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g1037 Hepe-Chr9:10749433 Hepe09g1085 Hepe-Chr9:12071998 9.23e-113 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g1037 . 2 625 EIL Transcription Factor Family AT2G27050 59.7 6.9e-194 674.1
Hepe02g2847 . 7 510 EIL Transcription Factor Family AT2G27050 61.5 7.0e-170 594.3
Hepe09g1085 . 68 328 EIL Transcription Factor Family AT2G27050 64.7 2.0e-92 337.0
Hepe09g1085 . 72 329 EIL Transcription Factor Family AT5G21120 51.7 2.4e-73 273.5
Hepe09g1085 . 60 580 EIL Transcription Factor Family AT1G73730 54.1 7.1e-140 494.6
Hepe09g1037 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 3.7e-104 375.9
Hepe02g2847 . 35 336 EIL Transcription Factor Family AT1G73730 60.1 1.6e-102 370.5
Hepe09g1037 . 3 625 EIL Transcription Factor Family AT3G20770 62.1 1.0e-211 733.4
Hepe02g2847 . 7 510 EIL Transcription Factor Family AT3G20770 62.9 1.5e-170 596.7
Hepe09g1085 . 68 294 EIL Transcription Factor Family AT3G20770 72.1 6.7e-94 342.0
Hepe09g1085 . 85 290 EIL Transcription Factor Family AT5G65100 58.9 1.7e-69 260.8
Hepe02g2847 . 45 300 EIL Transcription Factor Family AT5G10120 60.0 1.9e-85 313.5
Hepe09g1085 . 79 292 EIL Transcription Factor Family AT5G10120 57.5 4.6e-71 265.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56395 PF04873 EIN3 1.60E-127 No_clan Hepe TF