Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1122 ATGCAGTCGAAGTCTGAAACAAATAATCATCTCGAATCTGATCCAAATGGTGCTCCATCCACGAGTATCTATTTTGAACCCTGGTGGCGTGGTATGGGGTACAATCCTATTCCATTACCTGTGGTAGGAGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAATCAAATGATGGCCAGTCTGTGTCTAATAATGACGTGAATGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGAATCTCCACATTCTGCTCGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCATCTACTTTGCCAGCAATGCACGGTGAATGTCTGACGCAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCATGTGCATCAAATCCATATCAGGATCCATATTATGGAGGAATGATGGCATTCTATGGCCATCAGCCCCTGGGCTATCCTATGTTTGGAGCACCACATGCTAGAATGCCATTGCCTATCGAGATAGCACAAGACCCTGTTTTCGTGAATGCAAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAGGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAACATGCCATTAGAAGGACGAGGGGTAGTGGAGGGCGTTTCGCCAAGAAAAACGAAGCTGATGAAAAAGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTACCGCCTAAACGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGATGAACAAGGCCTCTGAGTAG 816 45.34 MQSKSETNNHLESDPNGAPSTSIYFEPWWRGMGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATESPHSARSYRQDAQKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMFGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAERKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKNEADEKEMHSDKVNESGYRLNDGSEQQNGSSLMNKASE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12757075 12759553 + Hsped.09g11220.1 Hepe09g1122 579806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1122 271 MobiDBLite consensus disorder prediction 208 227 - -
Hepe09g1122 271 Gene3D - 173 235 - -
Hepe09g1122 271 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g1122 271 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g1122 271 MobiDBLite consensus disorder prediction 252 271 - -
Hepe09g1122 271 MobiDBLite consensus disorder prediction 228 251 - -
Hepe09g1122 271 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Hepe09g1122 271 MobiDBLite consensus disorder prediction 207 271 - -
Hepe09g1122 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g1122 271 MobiDBLite consensus disorder prediction 1 24 - -
Hepe09g1122 271 MobiDBLite consensus disorder prediction 85 101 - -
Hepe09g1122 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 261 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Hepe09g1122 271 MobiDBLite consensus disorder prediction 1 20 - -
Hepe09g1122 271 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g1122 271 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g1122 271 MobiDBLite consensus disorder prediction 42 69 - -
Hepe09g1122 271 MobiDBLite consensus disorder prediction 36 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2684 Hepe-Chr8:68857174 Hepe09g1122 Hepe-Chr9:12757075 5.19e-32 transposed
Hepe03g1747 Hepe-Chr3:74366405 Hepe09g1122 Hepe-Chr9:12757075 1.58e-45 wgd
Hepe08g0129 Hepe-Chr8:1100717 Hepe09g1122 Hepe-Chr9:12757075 9.49e-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56397 PF02045 CBFB_NFYA 4.50E-26 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1122 K08064 - csv:101212860 470.7