Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1233 ATGGGTGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCGAATTTTTCCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGAGTCACTTCAAACATGTGATGCATTGCATAGTCAACAGAATGATATAGAAGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTACGAGCTCTCAAGGGATTGGTTAGACTCCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAGCAGCAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGCGATAGTGTTGGATCTGTTGAAGAAATTCAGTCAAAATTATTTAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCTTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGATATTAATCTCAGAGATGGAGTGACGATTCATGAGAACGGATCAGCTGAGGGCAAAAGTAACACTAAATCTCATTTAAAATCTACTGGCAAGAAAACAAACTTAGTGACTGATCAATCAAACCTCTCGAGCCAAAAAAATGCTGCCTCGCATTCTGATGGATGTGGTTCGTCATCCCCCACTAAGTCAGCTGGCACTGTAGAGGTATCCAGTGCGCAGATTCAAAAGCCCAAGTATAAACCTGCTCCTGAGAGGCCATTTGAAGAAGTCAAACCCAAAGTAGATACTGGTTTAAGATCACACAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAGAATGCAAAGAAGCGATTATCCATGCCTAATAATGTTGCAGATCCTGGTAGTCAAAATCAAACGACAAGAAATTCCAGCAGAACTCCTGGAAAAGTGACCGTGACCAAGTCCAACGATAAACCCAAGTCGATTTCAAGAGGCGACTCCAATTCTGCAAAATCCAGATTGCAGAATTGA 1311 43.4 MGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFSPFVEESNALSDPEAASIPSESLQTCDALHSQQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQQLENQARVREIEEGWCDSVGSVEEIQSKLFKRQEAAAKRERAMAYALAHQWQAGSRQQAAFSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVTIHENGSAEGKSNTKSHLKSTGKKTNLVTDQSNLSSQKNAASHSDGCGSSSPTKSAGTVEVSSAQIQKPKYKPAPERPFEEVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSMPNNVADPGSQNQTTRNSSRTPGKVTVTKSNDKPKSISRGDSNSAKSRLQN 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15956958 15975509 - Hsped.09g12330.1 Hepe09g1233 579917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1233 436 MobiDBLite consensus disorder prediction 389 436 - -
Hepe09g1233 436 ProSiteProfiles IQ motif profile. 96 124 - -
Hepe09g1233 436 SMART iq_5 118 139 IPR000048 GO:0005515(InterPro)
Hepe09g1233 436 SMART iq_5 95 117 IPR000048 GO:0005515(InterPro)
Hepe09g1233 436 Gene3D - 94 143 - -
Hepe09g1233 436 PANTHER IQ-DOMAIN 5-RELATED 5 403 - -
Hepe09g1233 436 MobiDBLite consensus disorder prediction 279 338 - -
Hepe09g1233 436 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515(InterPro)
Hepe09g1233 436 MobiDBLite consensus disorder prediction 277 436 - -
Hepe09g1233 436 MobiDBLite consensus disorder prediction 346 367 - -
Hepe09g1233 436 ProSiteProfiles IQ motif profile. 120 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1233 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1011 Hepe-Chr1:74744246 Hepe09g1233 Hepe-Chr9:15956958 1.42e-28 dispersed
Hepe01g1892 Hepe-Chr1:83760206 Hepe09g1233 Hepe-Chr9:15956958 3.26e-45 dispersed
Hepe02g2982 Hepe-Chr2:79044009 Hepe09g1233 Hepe-Chr9:15956958 2.84e-34 dispersed
Hepe03g0809 Hepe-Chr3:26921329 Hepe09g1233 Hepe-Chr9:15956958 9.19e-15 dispersed
Hepe03g1455 Hepe-Chr3:71311569 Hepe09g1233 Hepe-Chr9:15956958 4.82e-28 dispersed
Hepe04g0914 Hepe-Chr4:63416213 Hepe09g1233 Hepe-Chr9:15956958 1.25e-28 dispersed
Hepe05g0240 Hepe-Chr5:2863966 Hepe09g1233 Hepe-Chr9:15956958 3.35e-26 dispersed
Hepe05g2094 Hepe-Chr5:71475976 Hepe09g1233 Hepe-Chr9:15956958 1.80e-13 dispersed
Hepe06g0793 Hepe-Chr6:54679659 Hepe09g1233 Hepe-Chr9:15956958 5.18e-12 dispersed
Hepe07g0058 Hepe-Chr7:540541 Hepe09g1233 Hepe-Chr9:15956958 4.12e-19 dispersed
Hepe08g2401 Hepe-Chr8:64541515 Hepe09g1233 Hepe-Chr9:15956958 2.15e-07 dispersed
Hepe04g1898 Hepe-Chr4:73905450 Hepe09g1233 Hepe-Chr9:15956958 1.80e-39 transposed
Hepe07g0994 Hepe-Chr7:13583939 Hepe09g1233 Hepe-Chr9:15956958 4.14e-32 transposed
Hepe05g0811 Hepe-Chr5:20949080 Hepe09g1233 Hepe-Chr9:15956958 2.92e-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2982 . 1 480 IQD Protein Family AT3G52290 53.7 2.4e-103 372.9
Hepe09g1233 . 1 396 IQD Protein Family AT3G22190 58.0 3.7e-96 349.0
Hepe01g1892 . 1 440 IQD Protein Family AT2G26180 60.2 1.4e-119 426.8
Hepe04g1898 . 1 279 IQD Protein Family AT2G33990 52.6 1.4e-64 243.4
Hepe07g0994 . 40 215 IQD Protein Family AT2G33990 54.7 8.0e-49 191.0
Hepe07g0994 . 21 230 IQD Protein Family AT3G15050 56.1 1.0e-56 217.2
Hepe02g2513 . 120 472 IQD Protein Family AT5G13460 50.8 5.4e-74 275.4
Hepe03g1505 . 1 398 IQD Protein Family AT3G16490 51.5 4.2e-70 262.3
Hepe09g0820 . 1 396 IQD Protein Family AT3G16490 51.8 1.6e-69 260.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42