Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1309 ATGAAGCTTCTACTCAACTCCGACGATGTCCACGACGTTCTTCTTCCTCCTCCTAACTTCTCCATGGTCGAGGATGGCATTTTCCGATCCGGATTCCCTCAGCCCCCCAATTTCCCTTTCCTCGCCAACCTCAATCTTCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAGAGCTAATAACATCAACCTTTTTCAATTCAAAATTGAAGGGAAAAAGGATCCTTTCGTTTCGATTCCGAACGATGCTATTCTTGAGGCCCTAAAGATCCTAATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGAAAGCATCGAACAGGTTCACTCGTCGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGACGTCGGTGTTCGAGGAGTACCAGCGATTCGCAGGCATGAAATCGAGGGCGACAGATCTACAATTCATCGAGGCATTCGACATTGCATTGCTGAGGCAATGTGTTTACAGCATCATATACCAGTACCAAGGTTATAGCTCAAACAAGAGGAGGCTGATGTATAGAGAAGAAAAGTTGCAGAAGCCCCAAACAACATCAGTTTAG 603 45.77 MKLLLNSDDVHDVLLPPPNFSMVEDGIFRSGFPQPPNFPFLANLNLRSIIYLCPEPYPEENLEFLRANNINLFQFKIEGKKDPFVSIPNDAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGMKSRATDLQFIEAFDIALLRQCVYSIIYQYQGYSSNKRRLMYREEKLQKPQTTSV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19073193 19074688 + Hsped.09g13090.1 Hepe09g1309 579993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1309 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311(InterPro)
Hepe09g1309 200 FunFam probable tyrosine-protein phosphatase At1g05000 13 163 - -
Hepe09g1309 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Hepe09g1309 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Hepe09g1309 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Hepe09g1309 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
Hepe09g1309 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 172 IPR020422 GO:0006470(InterPro)
Hepe09g1309 200 CDD PFA-DSP_Siw14 14 160 - -
Hepe09g1309 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 160 IPR029021 -
Hepe09g1309 200 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Hepe09g1309 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 190 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Hepe09g1309 200 Pfam Tyrosine phosphatase family 14 164 IPR004861 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0073 Hepe-Chr2:865786 Hepe09g1309 Hepe-Chr9:19073193 2.20e-67 dispersed
Hepe09g1309 Hepe-Chr9:19073193 Hepe08g0587 Hepe-Chr8:5135298 3.12e-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1309 K18045 - csv:101211082 348.977