Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1458 ATGCCAACCCAGTGGAGGACTATTGCACCAATTGTCGGCCGTACTCCATCCCAGTGCCTCGAGCGCTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTATGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCTAACCCAGAATCGAAGCCTGCACGTCCTGATCCTGTCGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGAGGAAAAAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCTTTACAAAAAAGGAGAGAGTTAAAAGCTGCAGGGATTGATACTCGACACCGGAAGAGAAAGAGGAAAGGAATTGATTACAATGCTGAAATTCCTTTCGAGAAAAGGCCTCCTCCTGGATTTTTTGATGTTGCTGAGGAAGATAGACCAGTGGAACAGCCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGACGTAGAAACTCAATTAAGAAAGCAAGATGTTGCAAAGAATAAAATTGCTCAGAGGCAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGTTGAATGACCCAGAAATGGTAAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGAGCTTGCGGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGGAAGGGAGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGTTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCTTACACCAAATCCTATGCTAACACCCTCAGCAACTCCTGGTGGTGTAGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGAACACCTATTAGAGATGAATTACATATCAATGAAGATATGGACGGACATGAGAGTGCGAAACTCGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAACAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAAAGGGAGCTTCCTCGGCCTCCTACAGATTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCGTTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTATTAGAGCATGATAATGCGAAGTACCCAATCGATGAAAAGGTCAACAAGGAGAAAAAGAAAGGTTCCAAGCGCACTGGAAATGGACCTACTGCCGCCATCCCCACAATTGATGATTTTGAACAAACTGAGATGGAAGAGGCTGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCTCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCCAGTGTTGCTGGAAACCATGAGAAACTAGCCGCCCTGCAGGATGAATTTGAGTATGTGAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAGAGCCTTTGGCCGCAAATTGAGGCGACTTTCAAGCAGATAGACACTGCAGCAACGGAGCTTGAGTGCTTTGAAGCTCTTCAAAAGCAAGAAATGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTTGAGAGAACTCTGCAGCTACGTTATGGTAACCTTTTGGCGGACTTGGAAAAGGTGCAGAAAATCATGGATGAATGCAAGGCACACGCACAGAAGGAGGGAGAAATTGCAGCGGAGAATCGTGCTCTTCAGTTGGCCGAGGCCGAGGCTAATCGAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCCGTGTCTGCATTAGCAGCAGTTGATTGTGAAAATTCTATGCCTGTTACCTCAACTCCCAATGAATTAACGAGTGAACAACCGAACTCATCTGTGGGACATGAACAGGAAACTTCGAATTCTATGGATATTGATACAGAGAAAGAAAGTGTAGCGGTGAGCTTAGATATTGGCTTATCTGATAACAAACTACCTTCTGCAGTGGGAGAGAATGCATCATTGCCTGACAATGGCAATGGTTTCGAAGATTCTGATAAAAGCCAAACCATTGATGTTCCTTCTCAAGAACTCTTGGTCCCTCTTGCAAATGGCTCTCCAGAGGTGACCATTACGGTGGAAAATAAGATCAGCAATGATTCGGTTGATGGAGCAGCTATCGAAAATGCCGAATGTAGTACCAATGTTGTTGAGGAAGTCAAAGATGTCGAAACTCAGCAGCCCGTGATTGAAGCTGGAAACTCAGATGTGAATTCGACTAATCTGGATTCTGCTGCACCTGCATCTTCTAATAAGGATGGCCCTGCGGATAATGATAATGTTGAACTCCCTCATGGTGAAGGGGAAGCAACAGAATCAAATGTCTAG 2892 44.33 MPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVAEEDRPVEQPKFPTTIEELEGKRRIDVETQLRKQDVAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEILTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDGHESAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTDSLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTGNGPTAAIPTIDDFEQTEMEEADYLIKEEARYLCVAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGNLLADLEKVQKIMDECKAHAQKEGEIAAENRALQLAEAEANRTVGENADSSEAVSALAAVDCENSMPVTSTPNELTSEQPNSSVGHEQETSNSMDIDTEKESVAVSLDIGLSDNKLPSAVGENASLPDNGNGFEDSDKSQTIDVPSQELLVPLANGSPEVTITVENKISNDSVDGAAIENAECSTNVVEEVKDVETQQPVIEAGNSDVNSTNLDSAAPASSNKDGPADNDNVELPHGEGEATESNV 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28438004 28457345 - Hsped.09g14580.1 Hepe09g1458 580142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1458 963 MobiDBLite consensus disorder prediction 835 856 - -
Hepe09g1458 963 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 31 IPR017930 -
Hepe09g1458 963 Pfam pre-mRNA splicing factor component 331 582 IPR021786 -
Hepe09g1458 963 MobiDBLite consensus disorder prediction 782 808 - -
Hepe09g1458 963 MobiDBLite consensus disorder prediction 916 944 - -
Hepe09g1458 963 MobiDBLite consensus disorder prediction 32 74 - -
Hepe09g1458 963 Coils Coil 91 111 - -
Hepe09g1458 963 Coils Coil 736 756 - -
Hepe09g1458 963 MobiDBLite consensus disorder prediction 910 963 - -
Hepe09g1458 963 MobiDBLite consensus disorder prediction 523 546 - -
Hepe09g1458 963 MobiDBLite consensus disorder prediction 81 100 - -
Hepe09g1458 963 MobiDBLite consensus disorder prediction 306 346 - -
Hepe09g1458 963 MobiDBLite consensus disorder prediction 782 814 - -
Hepe09g1458 963 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 731 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1458 K12860 - - csv:101206265 1607.81
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g1458 . 1 775 MYB-Related Transcription Factor Family AT1G09770 74.2 1.1e-309 1059.3
Hepe09g0375 . 160 626 MYB-Related Transcription Factor Family AT3G18100 55.8 8.5e-151 531.2
Hepe09g0375 . 160 626 MYB-Related Transcription Factor Family AT3G18100 55.8 8.5e-151 531.2
Hepe09g1458 . 1 775 MYB-Related Transcription Factor Family AT1G09770 74.2 1.1e-309 1059.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49