Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe09g1678 | ATGTCAAGGCTTTCTTCAGCCATTCATCTTTTTATGTTCATCTTCATTCATGCATTACAAGTTTCCTCCATTGATGTTATATACCCTAACGAGCAAAACAATGCTATTCAGTCCATGATTTCCCAGATTTGTGCAGATATCGAAGATCGAAATTCATGCATTTCAAACATACAACTTGAGTTGGGAAGAAGTGTGAACTCACATCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCAACTCTTAACGAAGCGAGACGAGCCATAGAGTCTATAACGAAGTTCAGCACGTTCTCCTTTAGCTACCGTGAAGAAATGGCGATTGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTCTCGGAGCTTGCCTGGTCGTTAGCTGAGATGAAAAGGATTCGTGGAGGCGAAAACGAAGCTCCAGATGAAGGGAGCCTAAAAGCATGGCTGAGCGCCGCTCTCAGCAACCAAGACACATGCCTTGAAGGCTTTGAGGGAACAGACAGGCACATTGTAAGTTTCATTAGAGGGAGTTTGAAGCAAGTTACACTGCTAATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTCACCATTTCAACCCCCGCGGAATGAAACGGTGGTGAAAACCAGAAGTACAGAGTTTCCAGATTGGATGACGGATAGCGAACACGAGCTCGTGAAATCTCATCCACGTAGCATCCACGTCAATGCAATCGTAGCTTTGGATGGAAGCGGCGATTTTCGTTCGATCACAGAAGCTGTAAATGAAGCTCCAAATTATAGTAATAGAAGGTACATCATATATGTGAAGAAGGGAGTCTACAAAGAAAATATCGACATGAAACGAAAGAAAACCAACATAATATTTATTGGAGATGGTATCGGAGAAACGGTAGTGACGGGAAGTCGCAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTTTCCGGGAAGGGGTTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCGGAAAACCATCAAGCAGTGGCCCTCCGAGTTGACTCTGATCAATCAGCCTTCTATCGGTGCAGCTTCGAAGGCCATCAAGACACACTTTACGTCCATTCTCTTCGCCAATTTTATAGGGAATGCAACATATACGGCACCATAGACTACATCTTTGGCAATGGGGCAGCAGTGTTCCAAAAATGCAACATCTACACCAGAGTTCCGCTCCCTCTCCAGAAGGTCACGATCACCGCACAAGGTCGAAAATCCCCACATCAGAGTACGGGTTTTTCGATCCAAGATAGCTTTATTTATGCAACTCAGCCAACATATCTAGGAAGACCATGGAAGCTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGTGGTTTGGTACAACCTAGAGGGTGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTGTGGTATGGAGAGTATAAGAACTATGGACCTGGTGCATCCCTTTCGGGTCGTGTCAAATGGCCTGGGTACCACGATATCCGAGAAGCTGCCATGGCTAGGTTCTTCACCTCTGAGCACTTCATTGACGGTCGATCATGGTTGCCGAGGACGGGTATTAAGTTCACACTTGGATTGAGTAATTAA | 1626 | 44.9 | MSRLSSAIHLFMFIFIHALQVSSIDVIYPNEQNNAIQSMISQICADIEDRNSCISNIQLELGRSVNSHPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRGGENEAPDEGSLKAWLSAALSNQDTCLEGFEGTDRHIVSFIRGSLKQVTLLISNVLALYTQLHSSPFQPPRNETVVKTRSTEFPDWMTDSEHELVKSHPRSIHVNAIVALDGSGDFRSITEAVNEAPNYSNRRYIIYVKKGVYKENIDMKRKKTNIIFIGDGIGETVVTGSRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFYRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHDIREAAMARFFTSEHFIDGRSWLPRTGIKFTLGLSN | 541 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 50373634 | 50375388 | - | Hsped.09g16780.1 | Hepe09g1678 | 580362 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe09g1678 | 541 | ProSitePatterns | Pectinesterase signature 2. | 381 | 390 | IPR033131 | - | |
| Hepe09g1678 | 541 | SMART | PMEI_2 | 35 | 190 | IPR006501 | GO:0004857(InterPro) | |
| Hepe09g1678 | 541 | SUPERFAMILY | Pectin lyase-like | 236 | 538 | IPR011050 | - | |
| Hepe09g1678 | 541 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 36 | 196 | IPR035513 | - | |
| Hepe09g1678 | 541 | PANTHER | PECTINESTERASE | 10 | 529 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Hepe09g1678 | 541 | Gene3D | - | 232 | 539 | IPR012334 | - | |
| Hepe09g1678 | 541 | Pfam | Pectinesterase | 237 | 524 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Hepe09g1678 | 541 | Pfam | Plant invertase/pectin methylesterase inhibitor | 39 | 190 | IPR006501 | GO:0004857(InterPro) | |
| Hepe09g1678 | 541 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 38 | 195 | IPR035513 | - | |
| Hepe09g1678 | 541 | NCBIfam | pectinesterase inhibitor domain | 7 | 195 | IPR006501 | GO:0004857(InterPro) | |
| Hepe09g1678 | 541 | ProSitePatterns | Pectinesterase signature 1. | 262 | 281 | IPR018040 | - | |
| Hepe09g1678 | 541 | FunFam | Pectinesterase | 231 | 539 | - | - | |
| Hepe09g1678 | 541 | CDD | PMEI-like_4 | 52 | 194 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe06g0844 | Hepe-Chr6:55241602 | Hepe09g1678 | Hepe-Chr9:50373634 | 5.60e-153 | dispersed | |
| Hepe07g0066 | Hepe-Chr7:602499 | Hepe09g1678 | Hepe-Chr9:50373634 | 1.44e-139 | dispersed | |
| Hepe07g1125 | Hepe-Chr7:20386608 | Hepe09g1678 | Hepe-Chr9:50373634 | 2.91e-118 | dispersed | |
| Hepe08g1248 | Hepe-Chr8:13291241 | Hepe09g1678 | Hepe-Chr9:50373634 | 3.71e-89 | dispersed | |
| Hepe08g1615 | Hepe-Chr8:23844339 | Hepe09g1678 | Hepe-Chr9:50373634 | 3.51e-89 | dispersed | |
| Hepe09g1678 | Hepe-Chr9:50373634 | HepeContig65g0050 | Hepe-ChrContig65:4828376 | 3.35e-113 | dispersed | |
| Hepe09g1677 | Hepe-Chr9:50296711 | Hepe09g1678 | Hepe-Chr9:50373634 | 1.28e-118 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe09g1678 | K01051 | - | csv:101202977 | 1024.62 |