Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1764 ATGACAAATTATTATGATATTGATGACATTCTGACAGAGGAAGAGCTTGTCTCAGTTATGTTCCAAAAGTCTGTCAATGGAGTTGGAATCGATCCCAGTTCTCATACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTCGCACAAGAGCTACATCATAGGCAAGTGGCAGTTATGGGCTTACCTGGTTGTTTCAATCAAAGAACCCGACTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGTCTATACTTCTATGAATTTGGATGCAAGATCGCACCACTGGTTGGCGATAGAACGATCGGTTCTTGGCTTTTATCCACATTCAAAAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACTCCATAGTGTTTGCTGCAAGTTCAAAATACTTGACAATTCTATCAAAAGAAGAAACCAAAATGTATGAGGCGGCTCAATCCTCAATGACAGCCTTTAAGAAATGGCGGATGGGTGGACCTAGATTTCAGAAAGCATCCTTTCTTGGGAGGAAGAGGAAGTCATCTGAGTAG 558 41.94 MTNYYDIDDILTEEELVSVMFQKSVNGVGIDPSSHTDSVESGSKVELPFWLAQELHHRQVAVMGLPGCFNQRTRLEIQADAAFVDLRSRCLYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHSIVFAASSKYLTILSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLGRKRKSSE 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 54923089 54926588 + Hsped.09g17640.1 Hepe09g1764 580448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1764 185 Gene3D - 2 166 IPR038437 -
Hepe09g1764 185 SUPERFAMILY PriA/YqbF domain 1 66 - -
Hepe09g1764 185 Pfam GINS/PriA/YqbF domain 5 55 - -
Hepe09g1764 185 CDD GINS_A_psf3 65 167 - -
Hepe09g1764 185 SUPERFAMILY GINS helical bundle-like 65 166 IPR036224 -
Hepe09g1764 185 CDD GINS_B_Psf3 4 66 - -
Hepe09g1764 185 PANTHER UNCHARACTERIZED 1 183 IPR010492 GO:0000811(PANTHER)|GO:1902975(PANTHER)
Hepe09g1764 185 Pfam GINS complex protein helical bundle domain 66 165 IPR021151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1764 K10734 - - csv:101203869 338.576
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0483 . 59 785 Core DNA Replication Machinery Family AT4G14700 66.1 2.2e-275 945.3
Hepe06g0483 . 93 785 Core DNA Replication Machinery Family AT4G12620 69.9 1.9e-282 968.8
Hepe10g0715 . 2 361 Core DNA Replication Machinery Family AT2G37560 66.7 3.3e-143 505.0
Hepe01g0676 . 2 334 Core DNA Replication Machinery Family AT2G01120 65.3 5.8e-126 448.0
Hepe03g0562 . 3 535 Core DNA Replication Machinery Family AT4G29910 56.7 2.2e-168 589.3
Hepe01g0525 . 1 281 Core DNA Replication Machinery Family AT1G26840 66.0 4.0e-94 341.7
Hepe08g2041 . 5 803 Core DNA Replication Machinery Family AT1G79150 57.8 1.7e-241 832.8
Hepe02g0024 . 5 794 Core DNA Replication Machinery Family AT1G79150 57.5 5.9e-239 824.3
Hepe05g1030 . 1 939 Core DNA Replication Machinery Family AT1G44900 74.7 0.0e+00 1339.3
Hepe04g1984 . 1 575 Core DNA Replication Machinery Family AT5G46280 79.3 3.1e-263 904.4
Hepe02g0482 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.6 0.0e+00 1183.7
Hepe08g2481 . 1 737 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1099.3
Hepe07g2577 . 61 893 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1193.7
Hepe09g1860 . 62 894 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1171.4
Hepe04g2123 . 59 797 Core DNA Replication Machinery Family AT5G44635 60.4 1.2e-266 916.4
Hepe09g1857 . 18 543 Core DNA Replication Machinery Family AT5G44635 69.3 9.5e-200 694.1
Hepe09g1855 . 7 316 Core DNA Replication Machinery Family AT5G44635 71.9 5.9e-125 445.7
Hepe09g1861 . 3 270 Core DNA Replication Machinery Family AT5G44635 73.1 3.3e-112 403.3
Hepe03g1834 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1205.7
Hepe09g0663 . 40 509 Core DNA Replication Machinery Family AT2G29680 58.1 1.9e-155 546.2
Hepe09g0663 . 42 470 Core DNA Replication Machinery Family AT1G07270 58.0 4.3e-138 488.4
Hepe03g1305 . 252 844 Core DNA Replication Machinery Family AT3G25100 77.0 9.0e-258 886.3
Hepe05g0235 . 53 834 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.5
Hepe02g0733 . 16 636 Core DNA Replication Machinery Family AT2G14050 78.4 4.2e-285 977.2
Hepe08g0291 . 1 410 Core DNA Replication Machinery Family AT2G20980 55.3 1.8e-116 416.4
Hepe01g1589 . 1 973 Core DNA Replication Machinery Family AT1G77320 51.0 2.7e-262 902.1
Hepe03g1610 . 1 192 Core DNA Replication Machinery Family AT1G80190 64.6 2.4e-69 258.8
Hepe07g0357 . 24 168 Core DNA Replication Machinery Family AT3G12530 73.8 1.8e-61 232.3
Hepe07g1096 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 8.8e-61 229.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 8.4e-69 256.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 8.4e-69 256.9
Hepe08g0190 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 2.8e-51 198.7
Hepe08g1181 . 1 1539 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1745.3
Hepe10g1540 . 2 622 Core DNA Replication Machinery Family AT1G67630 62.0 2.3e-219 758.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe06g0251 . 3 445 Core DNA Replication Machinery Family AT5G41880 64.7 5.5e-175 610.9
Hepe04g1082 . 1 1086 Core DNA Replication Machinery Family AT5G63960 79.7 0.0e+00 1779.6
Hepe05g0526 . 1 437 Core DNA Replication Machinery Family AT2G42120 74.7 7.5e-201 696.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe08g0235 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.0 0.0e+00 2963.3
Hepe08g0235 . 9 2202 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2926.7
Hepe07g2561 . 13 288 Core DNA Replication Machinery Family AT5G22110 76.4 1.9e-128 456.4
Hepe07g2560 . 9 218 Core DNA Replication Machinery Family AT5G22110 56.7 1.1e-59 228.0
Hepe08g0185 . 1 925 Core DNA Replication Machinery Family AT5G22010 61.9 1.4e-305 1045.8
Hepe06g1212 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.4 7.2e-172 600.1
Hepe04g0589 . 1 354 Core DNA Replication Machinery Family AT5G27740 84.7 8.8e-176 613.2
Hepe02g2236 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 5.8e-154 540.8
Hepe08g2687 . 24 618 Core DNA Replication Machinery Family AT2G06510 68.1 1.0e-251 866.3
Hepe06g0960 . 34 702 Core DNA Replication Machinery Family AT2G06510 51.4 2.2e-198 689.1
Hepe09g0275 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 7.5e-244 840.1
Hepe06g0960 . 10 816 Core DNA Replication Machinery Family AT5G45400 51.9 5.3e-227 784.6
Hepe09g0275 . 1 618 Core DNA Replication Machinery Family AT5G61000 64.6 5.4e-237 817.4
Hepe06g0960 . 5 828 Core DNA Replication Machinery Family AT4G19130 52.6 1.5e-228 789.6
Hepe01g2077 . 1 267 Core DNA Replication Machinery Family AT2G24490 50.7 1.3e-70 263.5
Hepe09g1773 . 1 404 Core DNA Replication Machinery Family AT5G26680 83.2 4.8e-189 657.5
Hepe05g1820 . 1 1112 Core DNA Replication Machinery Family AT1G08840 53.1 8.9e-301 1030.0
Hepe05g1236 . 9 171 Core DNA Replication Machinery Family AT2G25100 69.9 5.6e-61 231.5
Hepe08g0926 . 1 794 Core DNA Replication Machinery Family AT1G08130 66.7 7.9e-294 1006.5
Hepe08g0926 . 194 794 Core DNA Replication Machinery Family AT1G49250 68.4 3.8e-241 831.2