Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe09g1768 | ATGACAAGGAAGAAGGTGAAATTGGCTTACATTCTGAATGACTCGGCAAGAAAGGCGACTTACAAGAAGAGAAAGAAAGGGCTGATGAAGAAGGTGAGTGAATTAAGCACTCTTTGTGGGATCGAGGCAGCTGCAATCGTCTTCAGCCCCTACGATTCTCAGCCTGAGCTCTGGCCTTCCCCCATTGGAGTTCAACGTGTTCTTTCTCAGTTCAAGAAGATGCCTGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGACATTTCTGCGCCAAAGGATTGCGAAAGCCAACGAGCAATTGAAGAAGATGAGGAAAGAGAACCGTGAGAAAGAGATCACACGCCTGATGTTCCAGAGCCTGACTGCTGCAAAAGGCCTGCATGGCCTCAACATGCTTGATTTGAACGACCTCACTTGGCTCATTGATCAGAATCTCAAGGACATCACCAAACGCATCGACTCCCTCACCAAGCCGCACTCGCAACCGCAACCACAACCGCCACCGCCACCGCCACCCATGCAACCTCAACCTCAGCCGCCGCCGCAGACCGCTGCGTGGTTGATGGAACTTGTGAGCCCTCATGATCAAATGGGGTTCGTTGGGGATGACATTCTTTTGCCTTTTGGAGATCATATTTACAACCATAATGCCATGTGGTCCAATGCTTTTTTTCCTTAA | 681 | 49.78 | MTRKKVKLAYILNDSARKATYKKRKKGLMKKVSELSTLCGIEAAAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKENREKEITRLMFQSLTAAKGLHGLNMLDLNDLTWLIDQNLKDITKRIDSLTKPHSQPQPQPPPPPPPMQPQPQPPPQTAAWLMELVSPHDQMGFVGDDILLPFGDHIYNHNAMWSNAFFP | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 55316883 | 55317634 | - | Hsped.09g17680.1 | Hepe09g1768 | 580452 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe09g1768 | 226 | MobiDBLite | consensus disorder prediction | 161 | 183 | - | - | |
Hepe09g1768 | 226 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
Hepe09g1768 | 226 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe09g1768 | 226 | Coils | Coil | 87 | 114 | - | - | |
Hepe09g1768 | 226 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 153 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Hepe09g1768 | 226 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe09g1768 | 226 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
Hepe09g1768 | 226 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 51 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe09g1768 | 226 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe09g1768 | 226 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe09g1768 | 226 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe09g1768 | 226 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe09g1768 | 226 | MobiDBLite | consensus disorder prediction | 156 | 183 | - | - | |
Hepe09g1768 | 226 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe05g0453 | Hepe-Chr5:5993205 | Hepe09g1768 | Hepe-Chr9:55316883 | 2.60e-39 | dispersed | |
Hepe07g1493 | Hepe-Chr7:50135630 | Hepe09g1768 | Hepe-Chr9:55316883 | 1.90e-80 | dispersed | |
Hepe09g1768 | Hepe-Chr9:55316883 | Hepe08g1226 | Hepe-Chr8:12855178 | 3.12e-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56418 | PF00319 | SRF-TF | 2.10E-18 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe09g1768 | - | - | - | 0.0 |