Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1768 ATGACAAGGAAGAAGGTGAAATTGGCTTACATTCTGAATGACTCGGCAAGAAAGGCGACTTACAAGAAGAGAAAGAAAGGGCTGATGAAGAAGGTGAGTGAATTAAGCACTCTTTGTGGGATCGAGGCAGCTGCAATCGTCTTCAGCCCCTACGATTCTCAGCCTGAGCTCTGGCCTTCCCCCATTGGAGTTCAACGTGTTCTTTCTCAGTTCAAGAAGATGCCTGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGACATTTCTGCGCCAAAGGATTGCGAAAGCCAACGAGCAATTGAAGAAGATGAGGAAAGAGAACCGTGAGAAAGAGATCACACGCCTGATGTTCCAGAGCCTGACTGCTGCAAAAGGCCTGCATGGCCTCAACATGCTTGATTTGAACGACCTCACTTGGCTCATTGATCAGAATCTCAAGGACATCACCAAACGCATCGACTCCCTCACCAAGCCGCACTCGCAACCGCAACCACAACCGCCACCGCCACCGCCACCCATGCAACCTCAACCTCAGCCGCCGCCGCAGACCGCTGCGTGGTTGATGGAACTTGTGAGCCCTCATGATCAAATGGGGTTCGTTGGGGATGACATTCTTTTGCCTTTTGGAGATCATATTTACAACCATAATGCCATGTGGTCCAATGCTTTTTTTCCTTAA 681 49.78 MTRKKVKLAYILNDSARKATYKKRKKGLMKKVSELSTLCGIEAAAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKENREKEITRLMFQSLTAAKGLHGLNMLDLNDLTWLIDQNLKDITKRIDSLTKPHSQPQPQPPPPPPPMQPQPQPPPQTAAWLMELVSPHDQMGFVGDDILLPFGDHIYNHNAMWSNAFFP 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 55316883 55317634 - Hsped.09g17680.1 Hepe09g1768 580452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1768 226 MobiDBLite consensus disorder prediction 161 183 - -
Hepe09g1768 226 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Hepe09g1768 226 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 Coils Coil 87 114 - -
Hepe09g1768 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 153 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe09g1768 226 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Hepe09g1768 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 MobiDBLite consensus disorder prediction 156 183 - -
Hepe09g1768 226 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0453 Hepe-Chr5:5993205 Hepe09g1768 Hepe-Chr9:55316883 2.60e-39 dispersed
Hepe07g1493 Hepe-Chr7:50135630 Hepe09g1768 Hepe-Chr9:55316883 1.90e-80 dispersed
Hepe09g1768 Hepe-Chr9:55316883 Hepe08g1226 Hepe-Chr8:12855178 3.12e-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56418 PF00319 SRF-TF 2.10E-18 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1768 - - - 0.0