Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1768 ATGACAAGGAAGAAGGTGAAATTGGCTTACATTCTGAATGACTCGGCAAGAAAGGCGACTTACAAGAAGAGAAAGAAAGGGCTGATGAAGAAGGTGAGTGAATTAAGCACTCTTTGTGGGATCGAGGCAGCTGCAATCGTCTTCAGCCCCTACGATTCTCAGCCTGAGCTCTGGCCTTCCCCCATTGGAGTTCAACGTGTTCTTTCTCAGTTCAAGAAGATGCCTGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGACATTTCTGCGCCAAAGGATTGCGAAAGCCAACGAGCAATTGAAGAAGATGAGGAAAGAGAACCGTGAGAAAGAGATCACACGCCTGATGTTCCAGAGCCTGACTGCTGCAAAAGGCCTGCATGGCCTCAACATGCTTGATTTGAACGACCTCACTTGGCTCATTGATCAGAATCTCAAGGACATCACCAAACGCATCGACTCCCTCACCAAGCCGCACTCGCAACCGCAACCACAACCGCCACCGCCACCGCCACCCATGCAACCTCAACCTCAGCCGCCGCCGCAGACCGCTGCGTGGTTGATGGAACTTGTGAGCCCTCATGATCAAATGGGGTTCGTTGGGGATGACATTCTTTTGCCTTTTGGAGATCATATTTACAACCATAATGCCATGTGGTCCAATGCTTTTTTTCCTTAA 681 49.78 MTRKKVKLAYILNDSARKATYKKRKKGLMKKVSELSTLCGIEAAAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKENREKEITRLMFQSLTAAKGLHGLNMLDLNDLTWLIDQNLKDITKRIDSLTKPHSQPQPQPPPPPPPMQPQPQPPPQTAAWLMELVSPHDQMGFVGDDILLPFGDHIYNHNAMWSNAFFP 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 55316883 55317634 - Hsped.09g17680.1 Hepe09g1768 580452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1768 226 MobiDBLite consensus disorder prediction 161 183 - -
Hepe09g1768 226 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Hepe09g1768 226 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 Coils Coil 87 114 - -
Hepe09g1768 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 153 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe09g1768 226 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Hepe09g1768 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe09g1768 226 MobiDBLite consensus disorder prediction 156 183 - -
Hepe09g1768 226 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1768 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0453 Hepe-Chr5:5993205 Hepe09g1768 Hepe-Chr9:55316883 2.60e-39 dispersed
Hepe07g1493 Hepe-Chr7:50135630 Hepe09g1768 Hepe-Chr9:55316883 1.90e-80 dispersed
Hepe09g1768 Hepe-Chr9:55316883 Hepe08g1226 Hepe-Chr8:12855178 3.12e-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56418 PF00319 SRF-TF 2.10E-18 No_clan Hepe TF