Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1773 ATGGGCATTAAGGGTTTAACCAAGCTATTAGCTGACAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAAAATCGCAGTCGATGCCAGCATGAGTATTTATCAATTTCTTATTGTCGTCGGAAGAAGTGGGACTGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGAATGTTCAACCGGACAATAAGGCTTCTCGAATCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCCAAACGTTATTCAAAGAGAGCAGATGCTACTGAGGACCTGGCAGATGCAATTGAGGTTGGGAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTGAAGGTTACAAAGCAGCACAATGATGATTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCCGCGCTTTGCAAGCTAGGAAAGGTTTATGCTGTGGCGTCGGAAGACATGGATTCACTAACATTTGGATCTCCCATATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCGAAGATTTTGGAAGAGCTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGGCAGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCAGATGATTGGCCTTATCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTAATAACATTTTTGGTGAATGAGAATGGGTTCAACAGCGACAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGTTGGAGTCGTTTTTCAAGCCCGTAACTAATTCTTCAGTATCCATTAAGCGAAAGGTAAACAAATGTGTACTTAGGTTTCCCAAACCAGGAGTCCAGCATAAATACTCTCCACAAGCTTTTTATTCGTCAAGGACAAAGGTCATTGGCAGCCTAGGCATGTCAATGTTAGACCATTCTTCCAAGTACTCGGGGTCAGGGTCATTAGTTATGGCTGTTTGCTTCGGCACATGA 1254 43.46 MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLESGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPIFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPDDWPYQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLITFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRLESFFKPVTNSSVSIKRKVNKCVLRFPKPGVQHKYSPQAFYSSRTKVIGSLGMSMLDHSSKYSGSGSLVMAVCFGT 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 55651076 55674986 + Hsped.09g17730.1 Hepe09g1773 580457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1773 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Hepe09g1773 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Hepe09g1773 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Hepe09g1773 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Hepe09g1773 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Hepe09g1773 417 CDD H3TH_FEN1-Euk 222 289 - -
Hepe09g1773 417 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788(InterPro)
Hepe09g1773 417 Gene3D - 10 222 - -
Hepe09g1773 417 SMART 53exo3 29 373 IPR002421 GO:0003677(InterPro)|GO:0008409(InterPro)
Hepe09g1773 417 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Hepe09g1773 417 CDD PIN_FEN1 4 332 - -
Hepe09g1773 417 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Hepe09g1773 417 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Hepe09g1773 417 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
Hepe09g1773 417 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 364 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Hepe09g1773 417 SMART HhH_4 221 254 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Hepe09g1773 417 Gene3D - 223 286 - -
Hepe09g1773 417 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 352 IPR036279 -
Hepe09g1773 417 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Hepe09g1773 417 FunFam Flap endonuclease 1 219 286 - -
Hepe09g1773 417 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Hepe09g1773 417 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Hepe09g1773 417 FunFam Flap endonuclease 1 10 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0488 Hepe-Chr3:7586307 Hepe09g1773 Hepe-Chr9:55651076 3.66e-18 transposed
Hepe07g1815 Hepe-Chr7:60898760 Hepe09g1773 Hepe-Chr9:55651076 4.60e-20 transposed
Hepe02g1867 Hepe-Chr2:29299144 Hepe09g1773 Hepe-Chr9:55651076 3.88e-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1773 K04799 - csv:101204273 693.73