Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1781 ATGTCAGAAATTTCCGGTAACTCCTCAAGGGCCTTTGCCAGAGGATGTGACAAGCAAGAGGGCAAACCAACTCCAAGACAACGGTTACTGGTTGTAGCCAATAGGTTGCCCGTGTCTGCAGTTAGGAGGTCGGGTGGTGAAGAAGATTCCTTCTGGTCTTTGGAGAGTAGTCCTGGAGGTCCAGTGAGTGCACTTCTAGGCGTGAAGGACTTTGAAATCAGATGGATTGGATGGGCAGATGTAAATGTGCGAAATGAGGTAGAACAAAAGACACTCACTCAAGCTTTGGCAAAAAAGGGGTGTATCCCTGTTTTCCTCGATGAAGAGCTCATTGATCTATACTACAATGGTTTTTGCAACAATATTTTATGGCCTTTGTTTCATTACTTTGACCTTCCTCAAGAGGATAATGTTGCAACCACTAGGAGTTTTGATTGTCAGTTTGGGGCATACAAGAAGGCAAACCAAATGTTTGGGGATGTAGTTAATAAACACTACGAGGAGGGTGATATTGTTTGGTGCCACAATTACCATCTTATGTTTCTTCCAAAATTACTGAAAGAACATAATCCTACGATGAAAGTCGGCTTGTTTCTCAATACACCTTTTCCTTCTCCTGAAACGTACAAAACCCTTCCCCCCCGATCAGAGCTTCTGCGCTCAGTACTTGCTGCTGATCTTGTTGGCTTTCACACAAGTGATTATGCTGGTAATTTCGTGAGAGCTTGTTCTTCTATTTTTGGACCTAGACTTGTTGGGGTACCAGAAGGAGTCAAGGACCAAGAAGCTGGAAAGCTAACACGTGTGACTGCATTCCCTATTGGTATAGACTTGGAACGATTCATACATGCCCTCAAGATTCATGAAGTCCAAGAACATATTGAAGAGTTGAAGGAAAGATTCAAGGGTCAAAAGATAATTTTAGGTGTTGATCGTCTTGATATGATTAAAGGAATACCTTCAAAGATGTTAGCATTTGAAAAATTCTTGGAGGAAAACCCTCATTGGTGTGATAAAGTTGTTTTAATACAAATTGCAGTGCCAACAAGAACAAATGTGCCAAATTACCAAAAGCTTACAAGACATGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACATTTACTACTATGCCTATACACCATCTGGATCGCTCCCTTGATTTTCATGCATTATGTGCACTATATGCCTTAACTGACGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCCCGTCAGTTATGAGTTCGTTGCTTGCCAGGATGCAAAGAAAGGGGTTTTAATTCTTAGCGAGTTTGATGGTGCTGCACAATCTCTCAGCGCTGGAGCCCTTTTGGTAAACCCCTGGGATAAAACAGAACTTGCAAAATCAATCGAGAGGGCATTAAATATGGGTGCTGACGAAAGAGAAAAGCGGCATAAGCATAATTTTCTACACGTGTCAACACACACGGTCCAGGAATGGGCTAAAACTTTTGTGAGGTTTTAG 1500 41.87 MSEISGNSSRAFARGCDKQEGKPTPRQRLLVVANRLPVSAVRRSGGEEDSFWSLESSPGGPVSALLGVKDFEIRWIGWADVNVRNEVEQKTLTQALAKKGCIPVFLDEELIDLYYNGFCNNILWPLFHYFDLPQEDNVATTRSFDCQFGAYKKANQMFGDVVNKHYEEGDIVWCHNYHLMFLPKLLKEHNPTMKVGLFLNTPFPSPETYKTLPPRSELLRSVLAADLVGFHTSDYAGNFVRACSSIFGPRLVGVPEGVKDQEAGKLTRVTAFPIGIDLERFIHALKIHEVQEHIEELKERFKGQKIILGVDRLDMIKGIPSKMLAFEKFLEENPHWCDKVVLIQIAVPTRTNVPNYQKLTRHVHEIVGRINGRFGTFTTMPIHHLDRSLDFHALCALYALTDVALVTSLRDGMNPVSYEFVACQDAKKGVLILSEFDGAAQSLSAGALLVNPWDKTELAKSIERALNMGADEREKRHKHNFLHVSTHTVQEWAKTFVRF 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 56092728 56100000 - Hsped.09g17810.1 Hepe09g1781 580465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1781 499 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 19 282 - -
Hepe09g1781 499 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 27 498 - -
Hepe09g1781 499 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 283 486 - -
Hepe09g1781 499 Pfam Glycosyltransferase family 20 28 498 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Hepe09g1781 499 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 20 497 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Hepe09g1781 499 Gene3D Glycogen Phosphorylase B; 16 269 - -
Hepe09g1781 499 Gene3D Glycogen Phosphorylase B; 279 486 - -
Hepe09g1781 499 MobiDBLite consensus disorder prediction 1 23 - -
Hepe09g1781 499 CDD GT20_TPS 28 498 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1781 K16055 - - csv:101204478 778.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0461 Hepe-Chr1:60196302 Hepe09g1781 Hepe-Chr9:56092728 4.97e-10 dispersed
Hepe01g0462 Hepe-Chr1:60197584 Hepe09g1781 Hepe-Chr9:56092728 1.27e-13 dispersed
Hepe07g1818 Hepe-Chr7:60930998 Hepe09g1781 Hepe-Chr9:56092728 4.28e-254 dispersed
Hepe09g0190 Hepe-Chr9:1493385 Hepe09g1781 Hepe-Chr9:56092728 7.63e-86 dispersed
Hepe09g1781 Hepe-Chr9:56092728 Hepe10g1655 Hepe-Chr10:53239067 3.48e-86 dispersed
Hepe09g1781 Hepe-Chr9:56092728 Hepe09g1783 Hepe-Chr9:56110966 3.59e-211 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1477 . 48 600 Trehalose Biosynthesis Gene Families AT4G24040 58.7 1.1e-197 686.8
Hepe02g0118 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.4 0.0e+00 1371.3
Hepe04g1932 . 1 752 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1218.4
Hepe06g1002 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 65.8 0.0e+00 1138.3
Hepe01g0613 . 1 848 Trehalose Biosynthesis Gene Families AT1G06410 63.9 0.0e+00 1118.2
Hepe10g1655 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.5 0.0e+00 1090.9
Hepe09g0190 . 1 834 Trehalose Biosynthesis Gene Families AT1G06410 59.5 1.5e-301 1032.3
Hepe08g0558 . 3 782 Trehalose Biosynthesis Gene Families AT1G06410 54.1 4.6e-247 851.3
Hepe01g1467 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 65.4 2.7e-247 851.7
Hepe07g1818 . 88 696 Trehalose Biosynthesis Gene Families AT1G16980 63.4 2.3e-238 822.0
Hepe09g1781 . 26 497 Trehalose Biosynthesis Gene Families AT1G16980 62.2 1.4e-171 600.1
Hepe09g1789 . 75 210 Trehalose Biosynthesis Gene Families AT1G16980 63.2 4.3e-43 173.3
Hepe09g1785 . 8 133 Trehalose Biosynthesis Gene Families AT1G16980 59.7 1.7e-39 161.4
Hepe10g1655 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.1 0.0e+00 1342.4
Hepe09g0190 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.7 0.0e+00 1208.0
Hepe01g0613 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.0 0.0e+00 1112.1
Hepe06g1002 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.8 0.0e+00 1106.3
Hepe02g0118 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.3 0.0e+00 1094.3
Hepe04g1932 . 1 758 Trehalose Biosynthesis Gene Families AT1G23870 62.8 5.8e-298 1020.4
Hepe10g1655 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.3 0.0e+00 1331.6
Hepe09g0190 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 67.2 0.0e+00 1212.6
Hepe01g0613 . 1 857 Trehalose Biosynthesis Gene Families AT1G60140 61.8 0.0e+00 1084.3
Hepe06g1002 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.8 8.4e-314 1073.2
Hepe02g0118 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 1.1e-312 1069.3
Hepe04g1932 . 1 758 Trehalose Biosynthesis Gene Families AT1G60140 61.4 3.8e-289 991.1
Hepe01g0613 . 1 853 Trehalose Biosynthesis Gene Families AT1G68020 79.4 0.0e+00 1411.7
Hepe06g1002 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 71.1 0.0e+00 1254.6
Hepe02g0118 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1138.3
Hepe10g1655 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1112.1
Hepe09g0190 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 61.3 0.0e+00 1079.7
Hepe04g1932 . 1 758 Trehalose Biosynthesis Gene Families AT1G68020 65.3 3.0e-310 1061.2
Hepe10g1655 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 67.8 0.0e+00 1188.7
Hepe09g0190 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.4 0.0e+00 1102.8
Hepe02g0118 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.3 2.9e-291 998.0
Hepe01g0613 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 57.8 1.9e-290 995.3
Hepe06g1002 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 2.2e-283 971.8
Hepe04g1932 . 1 758 Trehalose Biosynthesis Gene Families AT1G70290 58.2 8.6e-267 916.8
Hepe01g1467 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.1 0.0e+00 1471.8
Hepe07g1818 . 1 930 Trehalose Biosynthesis Gene Families AT1G78580 73.2 0.0e+00 1361.3
Hepe09g1781 . 16 497 Trehalose Biosynthesis Gene Families AT1G78580 76.3 2.6e-211 732.6
Hepe09g1783 . 79 516 Trehalose Biosynthesis Gene Families AT1G78580 55.7 2.1e-144 510.4
Hepe09g1785 . 8 133 Trehalose Biosynthesis Gene Families AT1G78580 72.1 1.1e-50 199.1
Hepe09g1789 . 75 210 Trehalose Biosynthesis Gene Families AT1G78580 76.5 1.4e-50 198.7
Hepe10g1655 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.3 8.9e-307 1049.7
Hepe06g1002 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.4 2.4e-296 1015.0
Hepe09g0190 . 10 835 Trehalose Biosynthesis Gene Families AT2G18700 59.2 9.3e-296 1013.1
Hepe02g0118 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.4 2.1e-292 1001.9
Hepe01g0613 . 1 848 Trehalose Biosynthesis Gene Families AT2G18700 57.3 1.7e-289 992.3
Hepe04g1932 . 1 752 Trehalose Biosynthesis Gene Families AT2G18700 58.5 5.5e-272 934.1
Hepe06g1002 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 78.6 0.0e+00 1363.2
Hepe01g0613 . 1 846 Trehalose Biosynthesis Gene Families AT4G17770 70.3 0.0e+00 1243.8
Hepe02g0118 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1149.0
Hepe10g1655 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1132.5
Hepe09g0190 . 1 835 Trehalose Biosynthesis Gene Families AT4G17770 62.0 0.0e+00 1093.6
Hepe04g1932 . 1 752 Trehalose Biosynthesis Gene Families AT4G17770 67.2 8.4e-314 1073.2
Hepe01g1467 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.1 1.3e-304 1042.3
Hepe07g1818 . 92 931 Trehalose Biosynthesis Gene Families AT4G27550 59.6 2.9e-288 988.0
Hepe09g1781 . 26 497 Trehalose Biosynthesis Gene Families AT4G27550 60.6 4.2e-162 568.9
Hepe09g1785 . 8 133 Trehalose Biosynthesis Gene Families AT4G27550 63.6 6.7e-43 172.9
Hepe09g1789 . 75 210 Trehalose Biosynthesis Gene Families AT4G27550 58.8 1.6e-36 151.8
Hepe01g1467 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.1 0.0e+00 1471.8
Hepe07g1818 . 1 930 Trehalose Biosynthesis Gene Families AT1G78580 73.2 0.0e+00 1361.3
Hepe09g1781 . 16 497 Trehalose Biosynthesis Gene Families AT1G78580 76.3 2.6e-211 732.6
Hepe09g1783 . 79 516 Trehalose Biosynthesis Gene Families AT1G78580 55.7 2.1e-144 510.4
Hepe09g1785 . 8 133 Trehalose Biosynthesis Gene Families AT1G78580 72.1 1.1e-50 199.1
Hepe09g1789 . 75 210 Trehalose Biosynthesis Gene Families AT1G78580 76.5 1.4e-50 198.7
Hepe01g1467 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 65.4 2.7e-247 851.7
Hepe07g1818 . 88 696 Trehalose Biosynthesis Gene Families AT1G16980 63.4 2.3e-238 822.0
Hepe09g1781 . 26 497 Trehalose Biosynthesis Gene Families AT1G16980 62.2 1.4e-171 600.1
Hepe09g1789 . 75 210 Trehalose Biosynthesis Gene Families AT1G16980 63.2 4.3e-43 173.3
Hepe09g1785 . 8 133 Trehalose Biosynthesis Gene Families AT1G16980 59.7 1.7e-39 161.4
Hepe01g1467 . 93 621 Trehalose Biosynthesis Gene Families AT1G17000 62.6 4.6e-193 671.8
Hepe07g1818 . 93 611 Trehalose Biosynthesis Gene Families AT1G17000 60.7 4.4e-188 655.2
Hepe09g1781 . 26 497 Trehalose Biosynthesis Gene Families AT1G17000 57.6 2.0e-151 533.5
Hepe09g1789 . 75 210 Trehalose Biosynthesis Gene Families AT1G17000 59.6 1.5e-39 161.8
Hepe09g1785 . 8 131 Trehalose Biosynthesis Gene Families AT1G17000 57.5 1.3e-38 158.7
Hepe01g1467 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.1 1.3e-304 1042.3
Hepe07g1818 . 92 931 Trehalose Biosynthesis Gene Families AT4G27550 59.6 2.9e-288 988.0
Hepe09g1781 . 26 497 Trehalose Biosynthesis Gene Families AT4G27550 60.6 4.2e-162 568.9
Hepe09g1785 . 8 133 Trehalose Biosynthesis Gene Families AT4G27550 63.6 6.7e-43 172.9
Hepe09g1789 . 75 210 Trehalose Biosynthesis Gene Families AT4G27550 58.8 1.6e-36 151.8
Hepe06g1002 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 78.6 0.0e+00 1363.2
Hepe01g0613 . 1 846 Trehalose Biosynthesis Gene Families AT4G17770 70.3 0.0e+00 1243.8
Hepe02g0118 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1149.0
Hepe10g1655 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1132.5
Hepe09g0190 . 1 835 Trehalose Biosynthesis Gene Families AT4G17770 62.0 0.0e+00 1093.6
Hepe04g1932 . 1 752 Trehalose Biosynthesis Gene Families AT4G17770 67.2 8.4e-314 1073.2
Hepe01g0613 . 1 853 Trehalose Biosynthesis Gene Families AT1G68020 79.4 0.0e+00 1411.7
Hepe06g1002 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 71.1 0.0e+00 1254.6
Hepe02g0118 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1138.3
Hepe10g1655 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1112.1
Hepe09g0190 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 61.3 0.0e+00 1079.7
Hepe04g1932 . 1 758 Trehalose Biosynthesis Gene Families AT1G68020 65.3 3.0e-310 1061.2
Hepe02g0118 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.4 0.0e+00 1371.3
Hepe04g1932 . 1 752 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1218.4
Hepe06g1002 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 65.8 0.0e+00 1138.3
Hepe01g0613 . 1 848 Trehalose Biosynthesis Gene Families AT1G06410 63.9 0.0e+00 1118.2
Hepe10g1655 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.5 0.0e+00 1090.9
Hepe09g0190 . 1 834 Trehalose Biosynthesis Gene Families AT1G06410 59.5 1.5e-301 1032.3
Hepe08g0558 . 3 782 Trehalose Biosynthesis Gene Families AT1G06410 54.1 4.6e-247 851.3
Hepe10g1655 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 67.8 0.0e+00 1188.7
Hepe09g0190 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.4 0.0e+00 1102.8
Hepe02g0118 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.3 2.9e-291 998.0
Hepe01g0613 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 57.8 1.9e-290 995.3
Hepe06g1002 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 2.2e-283 971.8
Hepe04g1932 . 1 758 Trehalose Biosynthesis Gene Families AT1G70290 58.2 8.6e-267 916.8
Hepe10g1655 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.1 0.0e+00 1342.4
Hepe09g0190 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.7 0.0e+00 1208.0
Hepe01g0613 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.0 0.0e+00 1112.1
Hepe06g1002 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.8 0.0e+00 1106.3
Hepe02g0118 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.3 0.0e+00 1094.3
Hepe04g1932 . 1 758 Trehalose Biosynthesis Gene Families AT1G23870 62.8 5.8e-298 1020.4
Hepe10g1655 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.3 0.0e+00 1331.6
Hepe09g0190 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 67.2 0.0e+00 1212.6
Hepe01g0613 . 1 857 Trehalose Biosynthesis Gene Families AT1G60140 61.8 0.0e+00 1084.3
Hepe06g1002 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.8 8.4e-314 1073.2
Hepe02g0118 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 1.1e-312 1069.3
Hepe04g1932 . 1 758 Trehalose Biosynthesis Gene Families AT1G60140 61.4 3.8e-289 991.1
Hepe10g1655 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.3 8.9e-307 1049.7
Hepe06g1002 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.4 2.4e-296 1015.0
Hepe09g0190 . 10 835 Trehalose Biosynthesis Gene Families AT2G18700 59.2 9.3e-296 1013.1
Hepe02g0118 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.4 2.1e-292 1001.9
Hepe01g0613 . 1 848 Trehalose Biosynthesis Gene Families AT2G18700 57.3 1.7e-289 992.3
Hepe04g1932 . 1 752 Trehalose Biosynthesis Gene Families AT2G18700 58.5 5.5e-272 934.1
Hepe06g1477 . 48 600 Trehalose Biosynthesis Gene Families AT4G24040 58.7 1.1e-197 686.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017914 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 4